CN189023

Overview
NameCN189023
Unique NameCN189023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189023 vs. ExPASy Swiss-Prot
Match: Y1300_SYNY3 (Uncharacterized protein slr1300 OS=Synechocystis sp. (strain PCC 6803) GN=slr1300 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = -1 
Query:  155 RMVFPLSLKHVNNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGEAFTLSRIIAEGIAVGADIGEAFLLKKYEAERKPANIVMMAVLDGFQKGYFVDFGPLNILGAAAFHGAQYISPLKRNIISYASG 532
            R +FP+ L   + YV  R+ L+GDAAH  HP+ GQG+NLG  +   L+++IA   + G D G   +LK+YE  RKP N +++   D   + +   + P   L        + + P K+  +   +G
Sbjct:  272 RRLFPVQLMQSDCYVQPRLALVGDAAHCCHPVGGQGLNLGIRDGAALAQVIATAHSQGEDWGSLAVLKRYEHWRKPENWLILGFTDLLDRFFSSHWLPAIALRRFGLEVLRLVPPAKKLALRLMTG 397
The following BLAST results are available for this feature:
BLAST of CN189023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y1300_SYNY31.030e-1332.54Uncharacterized protein slr1300 OS=Synechocystis s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189023 ID=CN189023; Name=CN189023; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTTTAAAAAAACCCAATCTTTTATTTCGTAGTTATCA
ATGTACAGACAGAATCCAGTCATTTCAACTCATCTAACATTATTCAAATA
CCAAGGTCTTAACTCTTAAGTAAAAAGTGGCAAAAGAAAAGGGAGTCTCT
GTTCTCCTGAAGCATACGAAATAATATTCCTCTTAAGAGGTGAAATATAC
TGAGCTCCGTGAAATGCAGCTGCCCCCAGTATGTTTAGAGGCCCGAAATC
AACAAAATACCCCTTCTGGAAGCCATCAAGGACAGCCATCATTACTATAT
TTGCGGGTTTTCTTTCTGCTTCATACTTTTTCAGTAAAAATGCCTCCCCA
ATGTCTGCCCCTACTGCAATTCCCTCAGCAATAATTCTAGAAAGAGTAAA
TGCCTCCCCAAAACCCAAATTAACACCTTGACCAGCTAGAGGATGAACAG
TGTGTGCAGCATCACCAATTAAAACAACACGCTTCGACACATAGTTATTA
ACATGCTTTAATGACAGTGGAAACACCATTCGTTCAAATGCCAACTTGAC
CACTCTTGGGGGTACTTCAAAGCACTCCTTCACTGACAAAGTTGCATCTC
CTCTAAACCAAGAAAACATATCCACACTACCGCTTGAGATTGACTTTGGA
TGAGGACCATATCCATAATCAAGAGCATGATTTAAAAT
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