CN182375

Overview
NameCN182375
Unique NameCN182375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.173e-26
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 39.6614 bits (91), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NIRNWIRNIE+HAS
Sbjct:   92 NEKSFDNIRNWIRNIEEHAS 111

HSP 3 Score: 36.1946 bits (82), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+C+L R
Sbjct:    8 LFKLLLIGDSGVGKTCVLFR 27
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.173e-26
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 39.6614 bits (91), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NIRNWIRNIE+HAS
Sbjct:   92 NEKSFDNIRNWIRNIEEHAS 111

HSP 3 Score: 36.1946 bits (82), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+C+L R
Sbjct:    8 LFKLLLIGDSGVGKTCVLFR 27
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.173e-26
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 39.6614 bits (91), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NIRNWIRNIE+HAS
Sbjct:   92 NEKSFDNIRNWIRNIEEHAS 111

HSP 3 Score: 36.1946 bits (82), Expect = 1.173e-26
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+C+L R
Sbjct:    8 LFKLLLIGDSGVGKTCVLFR 27
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.977e-26
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIFQ 410
            +FKIRTIELDGKRIKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F+
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSFE 97

HSP 2 Score: 38.891 bits (89), Expect = 1.977e-26
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF NIRNW+RNIE+HAS
Sbjct:   92 NEKSFENIRNWVRNIEEHAS 111

HSP 3 Score: 35.4242 bits (80), Expect = 1.977e-26
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+C L R
Sbjct:    8 LFKLLLIGDSGVGKTCALFR 27
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.565e-26
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGK+IKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKKIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 38.5058 bits (88), Expect = 2.565e-26
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NI+NWIRNIE+HAS
Sbjct:   92 NEKSFDNIKNWIRNIEEHAS 111

HSP 3 Score: 37.3502 bits (85), Expect = 2.565e-26
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+CLL R
Sbjct:    8 LFKLLLIGDSGVGKTCLLFR 27
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.565e-26
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGK+IKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKKIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 38.5058 bits (88), Expect = 2.565e-26
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NI+NWIRNIE+HAS
Sbjct:   92 NEKSFDNIKNWIRNIEEHAS 111

HSP 3 Score: 37.3502 bits (85), Expect = 2.565e-26
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+CLL R
Sbjct:    8 LFKLLLIGDSGVGKTCLLFR 27
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.565e-26
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGK+IKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKKIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 38.5058 bits (88), Expect = 2.565e-26
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NI+NWIRNIE+HAS
Sbjct:   92 NEKSFDNIKNWIRNIEEHAS 111

HSP 3 Score: 37.3502 bits (85), Expect = 2.565e-26
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+CLL R
Sbjct:    8 LFKLLLIGDSGVGKTCLLFR 27
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.565e-26
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGK+IKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKKIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 38.5058 bits (88), Expect = 2.565e-26
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NI+NWIRNIE+HAS
Sbjct:   92 NEKSFDNIKNWIRNIEEHAS 111

HSP 3 Score: 37.3502 bits (85), Expect = 2.565e-26
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+CLL R
Sbjct:    8 LFKLLLIGDSGVGKTCLLFR 27
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.565e-26
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRTIELDGK+IKLQIWDTAGQERF   +  AYYRGAMGI+LVYD+T    F
Sbjct:   44 DFKIRTIELDGKKIKLQIWDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSF 96

HSP 2 Score: 38.5058 bits (88), Expect = 2.565e-26
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NI+NWIRNIE+HAS
Sbjct:   92 NEKSFDNIKNWIRNIEEHAS 111

HSP 3 Score: 37.3502 bits (85), Expect = 2.565e-26
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+CLL R
Sbjct:    8 LFKLLLIGDSGVGKTCLLFR 27
[Close]
BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-25
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 3 
Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +FKIRT+ELDGK+IKLQIWDTAGQERF   +  AYYRGAMGI+ VYD+T    F
Sbjct:   44 DFKIRTVELDGKKIKLQIWDTAGQERF-RTITTAYYRGAMGIMKVYDITNEKSF 96

HSP 2 Score: 38.5058 bits (88), Expect = 1.590e-25
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:  394 DESSFNNIRNWIRNIEQHAS 453
            +E SF+NI+NWIRNIE+HAS
Sbjct:   92 NEKSFDNIKNWIRNIEEHAS 111

HSP 3 Score: 37.3502 bits (85), Expect = 1.590e-25
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L KLLLIGDSGVGK+CLL R
Sbjct:    8 LFKLLLIGDSGVGKTCLLFR 27
The following BLAST results are available for this feature:
BLAST of CN182375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
RAB8A_HUMAN1.173e-2675.93Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA1.173e-2675.93Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN1.173e-2675.93Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB8A_CHICK1.977e-2674.55Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB8B_RAT2.565e-2674.07Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB2.565e-2674.07Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE2.565e-2674.07Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN2.565e-2674.07Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN2.565e-2674.07Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB8_DISOM1.590e-2570.37Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002F18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182375 ID=CN182375; Name=CN182375; organism=Citrus sinensis; type=EST; length=465bp
GAGGCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGCGCTC
TCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTATGGCT
GCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGCTGCT
CCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCT
CTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGAACTT
CAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATAT
GGGATACTGCAGGTCAAGAGAGGTTTTCGAACAATTTACAACCCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCCGACGAGT
CATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCA
TCTGACAAATGTAAA
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