CN182375 | Citrus Genome Database

Overview


Name	CN182375
Unique Name	CN182375
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	465

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.973e-16
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            +F+ + +++DG ++KLQIWDTAGQERF  ++  AYYR A  +LL+YDVT +  F
Sbjct:  100 DFRNKVVDVDGMKVKLQIWDTAGQERF-RSVTHAYYRDAHALLLLYDVTNKASF 152

HSP 2 Score: 33.8834 bits (76), Expect = 5.973e-16
Identity = 13/18 (72.22%), Postives = 18/18 (100.00%), Query Frame = 2

Query:  143 KLLLIGDSGVGKSCLLLR 196
            K++L+GDSGVGK+CLL+R
Sbjct:   65 KVMLVGDSGVGKTCLLVR 82

HSP 3 Score: 26.1794 bits (56), Expect = 5.973e-16
Identity = 8/21 (38.10%), Postives = 17/21 (80.95%), Query Frame = 1

Query:  394 DESSFNNIRNWIRNIEQHASD 456
            +++SF++I+ W+  I++HA D
Sbjct:  148 NKASFDSIQAWLTEIQEHAQD 168

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.031e-16
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3

Query:  249 FKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIFQ 410
            F  RT+++DGK +K QIWDTAGQER+   +  AYYRGA+G LLVYDVTRR  F+
Sbjct:   50 FATRTLKVDGKVVKAQIWDTAGQERY-RAITSAYYRGAVGALLVYDVTRRATFE 102

HSP 2 Score: 30.8018 bits (68), Expect = 6.031e-16
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L K++LIGDSGVGKS LL R
Sbjct:   13 LFKVVLIGDSGVGKSNLLSR 32

HSP 3 Score: 20.4014 bits (41), Expect = 6.031e-16
Identity = 4/16 (25.00%), Postives = 11/16 (68.75%), Query Frame = 1

Query:  400 SSFNNIRNWIRNIEQH 447
            ++F N+  W++ ++ H
Sbjct:   99 ATFENVDRWLKELKNH 114

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.031e-16
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 3

Query:  249 FKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIFQ 410
            F  R+I++DGK IK QIWDTAGQER+   +  AYYRGA+G LLVYD+T+ V F+
Sbjct:   49 FATRSIQVDGKTIKAQIWDTAGQERY-RAITSAYYRGAVGALLVYDITKSVTFE 101

HSP 2 Score: 30.8018 bits (68), Expect = 6.031e-16
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L K++LIGDSGVGKS LL R
Sbjct:   12 LFKVVLIGDSGVGKSNLLSR 31

HSP 3 Score: 21.9422 bits (45), Expect = 6.031e-16
Identity = 5/16 (31.25%), Postives = 10/16 (62.50%), Query Frame = 1

Query:  403 SFNNIRNWIRNIEQHA 450
            +F N+  W++ +  HA
Sbjct:   99 TFENVERWLKELRDHA 114

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.807e-16
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 3

Query:  249 FKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            F  RT++++GK +K QIWDTAGQER+   +  AYYRGA+G LLVYD+T+R  F
Sbjct:   49 FATRTLQVEGKTVKAQIWDTAGQERY-RAITSAYYRGAVGALLVYDITKRQTF 100

HSP 2 Score: 30.4166 bits (67), Expect = 7.807e-16
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L K++LIGDSGVGKS +L R
Sbjct:   12 LFKIVLIGDSGVGKSNILSR 31

HSP 3 Score: 23.8682 bits (50), Expect = 7.807e-16
Identity = 6/16 (37.50%), Postives = 12/16 (75.00%), Query Frame = 1

Query:  403 SFNNIRNWIRNIEQHA 450
            +F+N++ W+R +  HA
Sbjct:   99 TFDNVQRWLRELRDHA 114

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.814e-16
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 3

Query:  249 FKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            F  RT++++GK +K QIWDTAGQER+   +  AYYRGA+G LLVYD+T+R  F
Sbjct:   49 FATRTLQVEGKTVKAQIWDTAGQERY-RAITSAYYRGAVGALLVYDITKRQTF 100

HSP 2 Score: 30.4166 bits (67), Expect = 7.814e-16
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L K++LIGDSGVGKS +L R
Sbjct:   12 LFKIVLIGDSGVGKSNILSR 31

HSP 3 Score: 23.8682 bits (50), Expect = 7.814e-16
Identity = 6/16 (37.50%), Postives = 12/16 (75.00%), Query Frame = 1

Query:  403 SFNNIRNWIRNIEQHA 450
            +F+N++ W+R +  HA
Sbjct:   99 TFDNVQRWLRELRDHA 114

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.829e-16
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 3

Query:  249 FKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            F  R I +D K IKLQIWDTAGQE F  ++  +YYRGA G LLVYD+TRR  F
Sbjct:   43 FGARMINIDNKPIKLQIWDTAGQESF-RSITRSYYRGAAGALLVYDITRRETF 94

HSP 2 Score: 33.8834 bits (76), Expect = 7.829e-16
Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L K ++IGD+GVGKSCLLL+
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQ 25

HSP 3 Score: 22.7126 bits (47), Expect = 7.829e-16
Identity = 6/17 (35.29%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  403 SFNNIRNWIRNIEQHAS 453
            +FN++ +W+ +  QHA+
Sbjct:   93 TFNHLASWLEDARQHAN 109

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.012e-15
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 3

Query:  249 FKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            F  R I LD K+IK QIWDTAGQER+   +  AYYRGA+G L+VYD+T++  F
Sbjct:   47 FATRNIVLDNKKIKAQIWDTAGQERY-RAITSAYYRGAVGALIVYDITKQSSF 98

HSP 2 Score: 31.5722 bits (70), Expect = 1.012e-15
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L K +LIGDSGVGKS LL+R
Sbjct:   10 LFKTVLIGDSGVGKSNLLMR 29

HSP 3 Score: 25.7942 bits (55), Expect = 1.012e-15
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 1

Query:  397 ESSFNNIRNWIRNIEQHA 450
            +SSF+N+  W++ + +HA
Sbjct:   95 QSSFDNVGRWLKELREHA 112

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.012e-15
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIFQQ 413
            +F++ ++ +DG R+KL IWDTAGQERF   L P+YYRGA G++ VYDVT R  F++
Sbjct:   47 DFRVTSMAIDGNRVKLAIWDTAGQERF-RTLTPSYYRGAQGVICVYDVTSRSSFEK 101

HSP 2 Score: 31.5722 bits (70), Expect = 1.012e-15
Identity = 13/19 (68.42%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  140 IKLLLIGDSGVGKSCLLLR 196
            +K+L+IG+SGVGKS L+LR
Sbjct:   12 LKILIIGESGVGKSSLMLR 30

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.012e-15
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 3

Query:  246 NFKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIFQQ 413
            +F++ ++ +DG R+KL IWDTAGQERF   L P+YYRGA G++ VYDVT R  F++
Sbjct:   47 DFRVTSMTIDGNRVKLAIWDTAGQERF-RTLTPSYYRGAQGVICVYDVTSRSSFEK 101

HSP 2 Score: 31.5722 bits (70), Expect = 1.012e-15
Identity = 13/19 (68.42%), Postives = 18/19 (94.74%), Query Frame = 2

Query:  140 IKLLLIGDSGVGKSCLLLR 196
            +K+L+IG+SGVGKS L+LR
Sbjct:   12 LKILIIGESGVGKSSLMLR 30

[Close]

BLAST of CN182375 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.012e-15
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 3

Query:  249 FKIRTIELDGKRIKLQIWDTAGQERFSNNLQPAYYRGAMGILLVYDVTRRVIF 407
            F  R I +D K IKLQIWDTAGQE F  ++  +YYRGA G LLVYD+TRR  F
Sbjct:   43 FGARMITIDNKPIKLQIWDTAGQESF-RSITRSYYRGAAGALLVYDITRRETF 94

HSP 2 Score: 33.8834 bits (76), Expect = 1.012e-15
Identity = 14/20 (70.00%), Postives = 18/20 (90.00%), Query Frame = 2

Query:  137 LIKLLLIGDSGVGKSCLLLR 196
            L K ++IGD+GVGKSCLLL+
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQ 25

HSP 3 Score: 22.7126 bits (47), Expect = 1.012e-15
Identity = 6/17 (35.29%), Postives = 13/17 (76.47%), Query Frame = 1

Query:  403 SFNNIRNWIRNIEQHAS 453
            +FN++ +W+ +  QHA+
Sbjct:   93 TFNHLASWLEDARQHAN 109

The following BLAST results are available for this feature:

BLAST of CN182375 vs. ExPASy Swiss-Prot

BLAST of CN182375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240


Match Name	E-value	Identity	Description
RAB26_BOVIN	5.973e-16	51.85	Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ...	[more]
RAA1B_ARATH	6.031e-16	62.96	Ras-related protein RABA1b OS=Arabidopsis thaliana...	[more]
YPTC6_CHLRE	6.031e-16	61.11	Ras-related protein YPTC6 OS=Chlamydomonas reinhar...	[more]
RB11C_LOTJA	7.807e-16	58.49	Ras-related protein Rab11C OS=Lotus japonicus GN=R...	[more]
RB2BV_BETVU	7.814e-16	58.49	Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB...	[more]
RAB2A_MAIZE	7.829e-16	62.26	Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P...	[more]
YPT3_SCHPO	1.012e-15	58.49	GTP-binding protein ypt3 OS=Schizosaccharomyces po...	[more]
RAB18_CAEEL	1.012e-15	55.36	Ras-related protein Rab-18 OS=Caenorhabditis elega...	[more]
RAB18_CAEBR	1.012e-15	55.36	Ras-related protein Rab-18 OS=Caenorhabditis brigg...	[more]
RAB2B_MAIZE	1.012e-15	62.26	Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0002F18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002F18, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN182375 ID=CN182375; Name=CN182375; organism=Citrus sinensis; type=EST; length=465bp
GAGGCCCTCCTCATTTCTCTCATCATCTCCTTTATTCAGAATTTGCGCTC
TCTCTCTTGATCTGCTTGTGAGATATAAATTTTGGTTAATTGCTATGGCT
GCTCCACCTGCAAGAGCCCGGGCTGATTACGATTACCTCATAAAGCTGCT
CCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCT
CTGATGGTTCCTTTACTACCAGTTTTATTACAACCATTGGTATTGAACTT
CAAGATTAGGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATAT
GGGATACTGCAGGTCAAGAGAGGTTTTCGAACAATTTACAACCCGCATAC
TACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCCGACGAGT
CATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGCA
TCTGACAAATGTAAA