CN189021

Overview
NameCN189021
Unique NameCN189021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SALTY (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhimurium GN=msrA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 2 
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFW 116
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SALNS (Peptide methionine sulfoxide reductase msrA OS=Salmonella newport (strain SL254) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 2 
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFW 116
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_THEVU (Peptide methionine sulfoxide reductase msrA OS=Thermoactinomyces vulgaris GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 2 
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A FGAGCFWGVE  F++VPGV  T VGY  G   NP+YE+VC+  T H EVV+V+YDP++ S++ LL+  W
Sbjct:    2 ATFGAGCFWGVEETFRQVPGVIDTAVGYMGGTTENPTYEEVCTDKTGHAEVVQVEYDPEQVSYEELLNVFW 72
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SALAR (Peptide methionine sulfoxide reductase msrA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 47/100 (47.00%), Postives = 61/100 (61.00%), Query Frame = 2 
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VRV YDP   S++ LL   W
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRVVYDPAVISYEQLLQVFW 116
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_RHORT (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVWA 736
            A F AGCFWGVE  F+++PGVT T VGY+ G+   P+Y  VC+G T H E VRV YDP + +++ LLD  WA
Sbjct:    4 ATFAAGCFWGVEETFRKIPGVTGTTVGYTGGHFKEPTYRQVCAGDTGHAEAVRVDYDPDKVTYEQLLDVFWA 75
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SALPB (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 2 
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQIFW 116
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SALTI (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhi GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL   W
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFW 116
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SALPK (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A (strain AKU_12601) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL   W
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFW 116
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SALPC (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi C (strain RKS4594) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL   W
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFW 116
[Close]
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SALPA (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.938e-18
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+ +    +VPA G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL   W
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFW 116
The following BLAST results are available for this feature:
BLAST of CN189021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
MSRA_SALTY1.563e-1846.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALNS1.563e-1846.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_THEVU2.665e-1856.34Peptide methionine sulfoxide reductase msrA OS=The... [more]
MSRA_SALAR2.665e-1847.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_RHORT2.665e-1854.17Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_SALPB3.481e-1846.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALTI5.938e-1845.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPK5.938e-1845.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPC5.938e-1845.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPA5.938e-1845.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189021 ID=CN189021; Name=CN189021; organism=Citrus sinensis; type=EST; length=738bp
CTTGAAGGTGTAACGTTAAATTTGCTGACACTATGGAGATTGATAGGGAA
TTTTATTTTAAGTTATTTTGGAAAAATGGAAAGAGGATGAGGAAATAATA
ATATTTTAATTTAAAGTAACTTGAAAAAAAATTCAATCCAATCTCGATTG
AGCAAATCGACACGAGGTAACTGAATTTTCTCAACACGTCTCCAAATCTT
TAAAACCAGCAATGGTCTTAAACAAGTGTCTTTCCATAACCACCACCACC
ACCACCGTCGCCGCTACCATCTCCAAATCGCCACTTCTTCTAATCTCCTC
TTCTCTCTCTTCACCAAAGAACCCTCTTTCTCTCTCTAAACCCAATCCGA
CCCATTTCCCTATCACTGCCCGACCCATTTCCACCCACTACAAGCCCCCC
ATGAACATCCTCAACAAGCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCC
CGCGTCCACGGAGAACTCCGCCATCGCTCAGGGCCCCGACGACGACGTTC
CGGCCCCCGGTCAGCAGTTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGC
GTCGAATTGGCGTTCCAGAGAGTGCCAGGTGTCACCAAGACCGAAGTTGG
GTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTGCAGTG
GGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTAAAGAG
TGTAGTTTCGATACTTTGCTTGATAATGTTTGGGCTCG
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