CN189021

Overview
NameCN189021
Unique NameCN189021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_CORDI (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium diphtheriae GN=msrA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 2
Query:  437 PSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            P+P P +   +   Q        PG +    G GC+WG E  F   PGV  T VG++ G   NP+Y + C+G TNH E+V V YDP + +FD L+
Sbjct:   26 PNPQPHAVLGTLRGQ--------PGTETIYIGIGCYWGAEKLFWETPGVVYTSVGFAGGITPNPTYRETCTGRTNHTEIVEVVYDPTQVTFDELV 112          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_CORML (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium melassecola GN=msrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            GQQ    G GCFWGVE  + ++ GV  T VGY+ G+  NP+Y +VCSG T H E+V V YDP + S + L+
Sbjct:   46 GQQRIWIGLGCFWGVEQMYWQMDGVEGTSVGYAGGFTPNPTYREVCSGRTGHTEIVEVVYDPSKISLEQLV 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_CORGL (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium glutamicum GN=msrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            GQQ    G GCFWGVE  + ++ GV  T VGY+ G+  NP+Y +VCSG T H E+V V YDP + S + L+
Sbjct:   46 GQQRIWIGLGCFWGVEQMYWQMDGVEGTSVGYAGGFTPNPTYREVCSGRTGHTEIVEVVYDPSKISLEQLV 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_CORGB (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium glutamicum (strain R) GN=msrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            GQQ    G GCFWGVE  + ++ GV  T VGY+ G+  NP+Y +VCSG T H E+V V YDP + S + L+
Sbjct:   46 GQQRIWIGLGCFWGVEQMYWQMDGVEGTSVGYAGGFTPNPTYREVCSGRTGHTEIVEVVYDPSKISLEQLV 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_XANCP (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. campestris GN=msrA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 37/70 (52.86%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  524 QFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            QFG GCFWG E  F  VPGV  T VGY+ G   N +Y +VCSG T H E V V YD +  SF+ LL   W
Sbjct:   49 QFGLGCFWGAERKFWNVPGVYTTAVGYAGGKTPNATYSEVCSGQTGHTEAVLVVYDAQAVSFEQLLRTFW 118          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_XANCB (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. campestris (strain B100) GN=msrA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 37/70 (52.86%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  524 QFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            QFG GCFWG E  F  VPGV  T VGY+ G   N +Y +VCSG T H E V V YD +  SF+ LL   W
Sbjct:   49 QFGLGCFWGAERKFWNVPGVYTTAVGYAGGKTPNATYSEVCSGQTGHTEAVLVVYDAQAVSFEQLLRTFW 118          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_XANC8 (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=msrA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 37/70 (52.86%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  524 QFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            QFG GCFWG E  F  VPGV  T VGY+ G   N +Y +VCSG T H E V V YD +  SF+ LL   W
Sbjct:   49 QFGLGCFWGAERKFWNVPGVYTTAVGYAGGKTPNATYSEVCSGQTGHTEAVLVVYDAQAVSFEQLLRTFW 118          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_ALKMQ (Peptide methionine sulfoxide reductase msrA OS=Alkaliphilus metalliredigens (strain QYMF) GN=msrA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  536 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            GCFWGVE   +R+ GV +T+VGY+ G++ NPSYE+VCS  T H EV  +++D  + S + LL+  W
Sbjct:    9 GCFWGVEAYMERIDGVVETKVGYANGHVENPSYEEVCSSQTGHAEVCYIKFDETKISLEILLNGFW 74          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_PSEPW (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas putida (strain W619) GN=msrA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  518 FAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            FA FG GCFWG E  F +  GV  T VGY+ G+  NP+YE+VCSG T H EVV V +D  + S+  LL   W
Sbjct:   53 FAIFGLGCFWGAERRFWQREGVVSTVVGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDKDKVSYRELLAMFW 124          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBL (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=msrA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2
Query:  536 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVWA 736
            GCFWGVE    R+ G+ +T+VGY+ G   NPSYE+VCSGTT H E   ++YD    S + LL+  W+
Sbjct:    9 GCFWGVEEYMSRIKGIVETKVGYANGIKENPSYEEVCSGTTGHAEACYIKYDESIISLEELLNKFWS 75          
The following BLAST results are available for this feature:
BLAST of CN189021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
MSRA_CORDI6.145e-1538.95Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_CORML1.048e-1449.30Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_CORGL1.048e-1449.30Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_CORGB1.048e-1449.30Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_XANCP1.369e-1452.86Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_XANCB1.369e-1452.86Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_XANC81.369e-1452.86Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_ALKMQ1.369e-1448.48Peptide methionine sulfoxide reductase msrA OS=Alk... [more]
MSRA_PSEPW1.788e-1451.39Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_CLOBL1.788e-1449.25Peptide methionine sulfoxide reductase msrA OS=Clo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189021 ID=CN189021; Name=CN189021; organism=Citrus sinensis; type=EST; length=738bp
CTTGAAGGTGTAACGTTAAATTTGCTGACACTATGGAGATTGATAGGGAA
TTTTATTTTAAGTTATTTTGGAAAAATGGAAAGAGGATGAGGAAATAATA
ATATTTTAATTTAAAGTAACTTGAAAAAAAATTCAATCCAATCTCGATTG
AGCAAATCGACACGAGGTAACTGAATTTTCTCAACACGTCTCCAAATCTT
TAAAACCAGCAATGGTCTTAAACAAGTGTCTTTCCATAACCACCACCACC
ACCACCGTCGCCGCTACCATCTCCAAATCGCCACTTCTTCTAATCTCCTC
TTCTCTCTCTTCACCAAAGAACCCTCTTTCTCTCTCTAAACCCAATCCGA
CCCATTTCCCTATCACTGCCCGACCCATTTCCACCCACTACAAGCCCCCC
ATGAACATCCTCAACAAGCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCC
CGCGTCCACGGAGAACTCCGCCATCGCTCAGGGCCCCGACGACGACGTTC
CGGCCCCCGGTCAGCAGTTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGC
GTCGAATTGGCGTTCCAGAGAGTGCCAGGTGTCACCAAGACCGAAGTTGG
GTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTGCAGTG
GGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTAAAGAG
TGTAGTTTCGATACTTTGCTTGATAATGTTTGGGCTCG
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