CN189021

Overview
NameCN189021
Unique NameCN189021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_PICTO (Peptide methionine sulfoxide reductase msrA OS=Picrophilus torridus GN=msrA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  536 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLD 724
            GCFW +E  F+ + G+   + GY+ G   NP+YE+VCS  T H E VR++YDP++ SFD +L+
Sbjct:   10 GCFWCMEAVFKDIYGINDVQPGYAGGTTVNPTYEEVCSQRTGHAETVRIRYDPEKISFDDILE 72          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA2_RHILO (Peptide methionine sulfoxide reductase msrA 2 OS=Rhizobium loti GN=msrA2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 2
Query:  491 DDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            D+  APG + A F  GCFWGV+  FQ V GV+K   GY+ G   +  YE V +G T H E V + YDP + ++  LL
Sbjct:    2 DEKAAPGSETAIFAGGCFWGVQGVFQHVKGVSKAVSGYTGGAKDDAVYETVGTGRTGHAESVEITYDPSKVTYGQLL 78          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_STRPM (Peptide methionine sulfoxide reductase msrA OS=Streptococcus pyogenes serotype M28 GN=msrA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A F  GCFW +   F+   G+     GY+ G+L NPSYE VC+ TT H E V + +DP+E S+  L++  W
Sbjct:    4 AIFAGGCFWCMVQPFEEQAGILSVRSGYTGGHLPNPSYEQVCAKTTGHTEAVEIIFDPEEISYKELVELYW 74          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_STRP3 (Peptide methionine sulfoxide reductase msrA OS=Streptococcus pyogenes serotype M3 GN=msrA.2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A F  GCFW +   F+   G+     GY+ G+L NPSYE VC+ TT H E V + +DP+E S+  L++  W
Sbjct:    4 AIFAGGCFWCMVQPFEEQAGILSVRSGYTGGHLPNPSYEQVCAKTTGHTEAVEIIFDPEEISYKELVELYW 74          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_LISMO (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes GN=msrA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++  W
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVVSGYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYW 79          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_LISMH (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=msrA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++  W
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVVSGYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYW 79          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_LISIN (Peptide methionine sulfoxide reductase msrA OS=Listeria innocua GN=msrA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E V + +DP    ++ L++  W
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVVSGYTGGHTVNPTYKEVCSGTTGHTEAVEITFDPAVFPYEKLVEVYW 79          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_BACSU (Peptide methionine sulfoxide reductase msrA OS=Bacillus subtilis GN=msrA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 2
Query:  512 QQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            ++ A F  GCFW +   F   PG+ K   GY+ G+  NP+YE+VCS TT H E V++ + P    ++ LL+  W
Sbjct:    5 KEIATFAGGCFWCMVKPFDEQPGIEKVVSGYTGGHTENPTYEEVCSETTGHREAVQITFHPDVFPYEKLLELFW 78          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_LISMF (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes serotype 4b (strain F2365) GN=msrA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++  W
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVISGYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYW 79          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_LISMC (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=msrA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A F  GCFW +   F   PG+ K   GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++  W
Sbjct:    9 ATFAGGCFWCMVKPFDTQPGIEKVISGYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYW 79          
The following BLAST results are available for this feature:
BLAST of CN189021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
MSRA_PICTO4.869e-1246.03Peptide methionine sulfoxide reductase msrA OS=Pic... [more]
MSRA2_RHILO4.869e-1244.16Peptide methionine sulfoxide reductase msrA 2 OS=R... [more]
MSRA_STRPM6.359e-1242.25Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_STRP36.359e-1242.25Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_LISMO6.359e-1239.44Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LISMH6.359e-1239.44Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LISIN6.359e-1240.85Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_BACSU6.359e-1239.19Peptide methionine sulfoxide reductase msrA OS=Bac... [more]
MSRA_LISMF8.305e-1239.44Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LISMC8.305e-1239.44Peptide methionine sulfoxide reductase msrA OS=Lis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189021 ID=CN189021; Name=CN189021; organism=Citrus sinensis; type=EST; length=738bp
CTTGAAGGTGTAACGTTAAATTTGCTGACACTATGGAGATTGATAGGGAA
TTTTATTTTAAGTTATTTTGGAAAAATGGAAAGAGGATGAGGAAATAATA
ATATTTTAATTTAAAGTAACTTGAAAAAAAATTCAATCCAATCTCGATTG
AGCAAATCGACACGAGGTAACTGAATTTTCTCAACACGTCTCCAAATCTT
TAAAACCAGCAATGGTCTTAAACAAGTGTCTTTCCATAACCACCACCACC
ACCACCGTCGCCGCTACCATCTCCAAATCGCCACTTCTTCTAATCTCCTC
TTCTCTCTCTTCACCAAAGAACCCTCTTTCTCTCTCTAAACCCAATCCGA
CCCATTTCCCTATCACTGCCCGACCCATTTCCACCCACTACAAGCCCCCC
ATGAACATCCTCAACAAGCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCC
CGCGTCCACGGAGAACTCCGCCATCGCTCAGGGCCCCGACGACGACGTTC
CGGCCCCCGGTCAGCAGTTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGC
GTCGAATTGGCGTTCCAGAGAGTGCCAGGTGTCACCAAGACCGAAGTTGG
GTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTGCAGTG
GGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTAAAGAG
TGTAGTTTCGATACTTTGCTTGATAATGTTTGGGCTCG
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