CN189021

Overview
NameCN189021
Unique NameCN189021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_CHRVO (Peptide methionine sulfoxide reductase msrA OS=Chromobacterium violaceum GN=msrA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVWA 736
            A  G GCFW +E AF ++ GV +   GY  G+  +P Y  VCSG + H EVV + YDP    + TLL   +A
Sbjct:    4 AILGGGCFWCLEAAFSQLKGVERVVSGYCGGHTDSPDYRQVCSGDSGHVEVVEISYDPALIDYATLLQVFFA 75          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRAB_NEIGO (Peptide methionine sulfoxide reductase msrA/msrB OS=Neisseria gonorrhoeae GN=msrAB PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 31/62 (50.00%), Postives = 37/62 (59.68%), Query Frame = 2
Query:  536 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            GCFWG+E  FQR+ GV     GY+ G   NPSYEDV    T H E V+V YD  + S D +L
Sbjct:  206 GCFWGLEAYFQRIDGVVDAVSGYANGNTENPSYEDVSYRHTGHAETVKVTYDADKLSLDDIL 267          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_NITSB (Peptide methionine sulfoxide reductase msrA OS=Nitratiruptor sp. (strain SB155-2) GN=msrA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 2
Query:  530 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            G GCFW +E  FQRV GV +   GY+     NP+YE VC+GTT   EVV++ +DP   +++ LL
Sbjct:    8 GGGCFWCLEAIFQRVKGVHRVTSGYAGCRRQNPTYEQVCTGTTKCAEVVKIDFDPHIINYEELL 71          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_ARTAT (Peptide methionine sulfoxide reductase msrA OS=Arthrobacter aurescens (strain TC1) GN=msrA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 2
Query:  530 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVWA 736
            G GCFW ++  +Q+  GV+    GY+ G++ NP Y +VCSGTT H EVV V +D      + +LD  +A
Sbjct:    7 GGGCFWCLDAVYQKTRGVSSVVSGYTGGHVRNPDYYEVCSGTTGHAEVVAVTFDETVVPEEVILDMFFA 75          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRAB_NEIMB (Peptide methionine sulfoxide reductase msrA/msrB OS=Neisseria meningitidis serogroup B GN=msrAB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 31/62 (50.00%), Postives = 37/62 (59.68%), Query Frame = 2
Query:  536 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            GCFWG+E  FQR+ GV     GY+ G   NPSYEDV    T H E V+V YD  + S D +L
Sbjct:  206 GCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDIL 267          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRAB_NEIMA (Peptide methionine sulfoxide reductase msrA/msrB OS=Neisseria meningitidis serogroup A GN=msrAB PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 31/62 (50.00%), Postives = 37/62 (59.68%), Query Frame = 2
Query:  536 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            GCFWG+E  FQR+ GV     GY+ G   NPSYEDV    T H E V+V YD  + S D +L
Sbjct:  206 GCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDIL 267          
The following BLAST results are available for this feature:
BLAST of CN189021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
MSRA_CHRVO7.030e-1143.06Peptide methionine sulfoxide reductase msrA OS=Chr... [more]
MSRAB_NEIGO7.030e-1150.00Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_NITSB9.182e-1146.88Peptide methionine sulfoxide reductase msrA OS=Nit... [more]
MSRA_ARTAT9.182e-1142.03Peptide methionine sulfoxide reductase msrA OS=Art... [more]
MSRAB_NEIMB9.182e-1150.00Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_NEIMA9.182e-1150.00Peptide methionine sulfoxide reductase msrA/msrB O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189021 ID=CN189021; Name=CN189021; organism=Citrus sinensis; type=EST; length=738bp
CTTGAAGGTGTAACGTTAAATTTGCTGACACTATGGAGATTGATAGGGAA
TTTTATTTTAAGTTATTTTGGAAAAATGGAAAGAGGATGAGGAAATAATA
ATATTTTAATTTAAAGTAACTTGAAAAAAAATTCAATCCAATCTCGATTG
AGCAAATCGACACGAGGTAACTGAATTTTCTCAACACGTCTCCAAATCTT
TAAAACCAGCAATGGTCTTAAACAAGTGTCTTTCCATAACCACCACCACC
ACCACCGTCGCCGCTACCATCTCCAAATCGCCACTTCTTCTAATCTCCTC
TTCTCTCTCTTCACCAAAGAACCCTCTTTCTCTCTCTAAACCCAATCCGA
CCCATTTCCCTATCACTGCCCGACCCATTTCCACCCACTACAAGCCCCCC
ATGAACATCCTCAACAAGCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCC
CGCGTCCACGGAGAACTCCGCCATCGCTCAGGGCCCCGACGACGACGTTC
CGGCCCCCGGTCAGCAGTTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGC
GTCGAATTGGCGTTCCAGAGAGTGCCAGGTGTCACCAAGACCGAAGTTGG
GTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTGCAGTG
GGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTAAAGAG
TGTAGTTTCGATACTTTGCTTGATAATGTTTGGGCTCG
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