CN189021

Overview
NameCN189021
Unique NameCN189021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_METAC (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina acetivorans GN=msrA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  500 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            P  G + A F AGCFWG+E AF++V GV  T VGYS G+   P+YE VC+  T H E VRV +DPK  S+  LLD  W
Sbjct:   24 PGEGLEKATFAAGCFWGIEEAFRQVKGVVATAVGYSGGHFEKPTYEQVCTLDTGHAEAVRVIFDPKVVSYKNLLDVFW 101          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVWA 736
            A F AGCFW VEL FQRV GVTKT VGY+ G + NP+Y  VCSG T   E V ++YDP++ +++ LL   W+
Sbjct:    4 ATFAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWS 75          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_CORK4 (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 48/116 (41.38%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  425 FGFRPSPDPASTENSAIAQGPDDDV---PAP--------------GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLL 721
            FG RP+P        A+  G D+ +   PAP              GQ+    G GCFWG E  F ++ GV  T VGY+ GY  NP+Y +VC+G T H E VRV YDP+E SF+ L+
Sbjct:    5 FGTRPTPTSIVNREDALP-GRDEPILPHPAPHTVLGTPIDGPWKDGQRSVVVGLGCFWGAEKLFWQIDGVESTAVGYAGGYTPNPTYREVCTGRTGHAETVRVIYDPQEVSFEDLI 119          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_VIBVU (Peptide methionine sulfoxide reductase msrA OS=Vibrio vulnificus GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            GQQ   FG GCFWG E  F ++ GV  T VGYS G+  NP+Y++VCSG T H EVVRV +DP+    + LL+  W
Sbjct:   41 GQQEILFGMGCFWGAERLFWQLDGVVSTSVGYSGGFTLNPTYQEVCSGQTGHTEVVRVIFDPQVLPLEQLLEKFW 115          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SHISS (Peptide methionine sulfoxide reductase msrA OS=Shigella sonnei (strain Ss046) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SHIFL (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri GN=msrA PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SHIF8 (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri serotype 5b (strain 8401) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SHIBS (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 4 (strain Sb227) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T ++       ++    G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLHAVNGHSMTNE--PDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SHIB3 (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVESLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SERP5 (Peptide methionine sulfoxide reductase msrA OS=Serratia proteamaculans (strain 568) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 48/104 (46.15%), Postives = 58/104 (55.77%), Query Frame = 2
Query:  434 RPSPDPASTEN----SAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T N     ++ Q PD      G + A F  GCFWGVE  F +  GV  T  GYS GY  NP+Y +VCSG T H EVVRV +DPK  S+  LL   W
Sbjct:   20 RTTPMPVATLNVVTDHSMTQVPD------GLEVAIFAMGCFWGVERLFWQQQGVYSTAAGYSGGYTPNPTYREVCSGQTGHTEVVRVVFDPKIISYKQLLQVFW 117          
The following BLAST results are available for this feature:
BLAST of CN189021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
MSRA_METAC2.256e-1752.56Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_DICDI2.947e-1754.17Peptide methionine sulfoxide reductase OS=Dictyost... [more]
MSRA_CORK42.947e-1741.38Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_VIBVU3.849e-1752.00Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_SHISS3.849e-1745.00Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIFL3.849e-1745.00Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIF83.849e-1745.00Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIBS3.849e-1742.00Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIB33.849e-1745.00Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SERP53.849e-1746.15Peptide methionine sulfoxide reductase msrA OS=Ser... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001D03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189021 ID=CN189021; Name=CN189021; organism=Citrus sinensis; type=EST; length=738bp
CTTGAAGGTGTAACGTTAAATTTGCTGACACTATGGAGATTGATAGGGAA
TTTTATTTTAAGTTATTTTGGAAAAATGGAAAGAGGATGAGGAAATAATA
ATATTTTAATTTAAAGTAACTTGAAAAAAAATTCAATCCAATCTCGATTG
AGCAAATCGACACGAGGTAACTGAATTTTCTCAACACGTCTCCAAATCTT
TAAAACCAGCAATGGTCTTAAACAAGTGTCTTTCCATAACCACCACCACC
ACCACCGTCGCCGCTACCATCTCCAAATCGCCACTTCTTCTAATCTCCTC
TTCTCTCTCTTCACCAAAGAACCCTCTTTCTCTCTCTAAACCCAATCCGA
CCCATTTCCCTATCACTGCCCGACCCATTTCCACCCACTACAAGCCCCCC
ATGAACATCCTCAACAAGCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCC
CGCGTCCACGGAGAACTCCGCCATCGCTCAGGGCCCCGACGACGACGTTC
CGGCCCCCGGTCAGCAGTTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGC
GTCGAATTGGCGTTCCAGAGAGTGCCAGGTGTCACCAAGACCGAAGTTGG
GTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTGCAGTG
GGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTAAAGAG
TGTAGTTTCGATACTTTGCTTGATAATGTTTGGGCTCG
back to top