CN189021

Overview
NameCN189021
Unique NameCN189021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_PSEA8 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain LESB58) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  437 PSPDPASTENSAIAQGPDDD--------VPAP-GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            P+PD A     +    P+           P P G Q   FG GCFWG E    + PGV  T VGY+ GY  NP+Y++VCSG T H+EVV V Y+P+E SF+ LL   W
Sbjct:   15 PTPDQALPGRESAMPVPEAHFVNGRPLTAPFPAGLQQVLFGMGCFWGAERRLWQQPGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFW 122          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_ENTS8 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            G + A F  GCFWGVE  F  +PGV  T  GY+ GY  NP+Y +VCSG T H E VRV YDP   S++ LL   W
Sbjct:   42 GMEVALFAMGCFWGVERLFWALPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPNVISYEQLLQVFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_BOVIN (Peptide methionine sulfoxide reductase OS=Bos taurus GN=MSRA PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            G Q A FG GCFWG E  F  + GV  T+VG++ GY  NP+Y++VCSG T H EVVRV + P+  SF+ LL   W
Sbjct:   62 GTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFW 136          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_OCHA4 (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 48/103 (46.60%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  434 RPSPDPASTE---NSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R  P P ST    N    +GP  +    G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  S D LL   W
Sbjct:   23 RAQPIPTSTTHFVNGRPLKGPWPE----GYKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFW 121          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_VIBCM (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae serotype O1 (strain M66-2) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  500 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            P  GQQ    G GCFWG E  F ++ GV  T VGYS G+  NP+YE+VCSG T H EVVRV +DP+      LL   W
Sbjct:   38 PQSGQQQILIGMGCFWGAERLFWQLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFW 115          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_VIBCH (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  500 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            P  GQQ    G GCFWG E  F ++ GV  T VGYS G+  NP+YE+VCSG T H EVVRV +DP+      LL   W
Sbjct:   38 PQSGQQQILIGMGCFWGAERLFWQLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFW 115          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_VIBC3 (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  500 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            P  GQQ    G GCFWG E  F ++ GV  T VGYS G+  NP+YE+VCSG T H EVVRV +DP+      LL   W
Sbjct:   38 PQSGQQQILIGMGCFWGAERLFWQLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFW 115          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_PHOLL (Peptide methionine sulfoxide reductase msrA OS=Photorhabdus luminescens subsp. laumondii GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 2
Query:  464 NSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            N A+     + VP    + A FG GCFWGVE  F + P +  T  GYS G   NP+YE++CSG T H EVVR+ YDP + S++ LL   W
Sbjct:   29 NHAVTDHTIEPVPE-NMEVAYFGMGCFWGVERLFWQQPDIYTTSAGYSGGTTANPTYEEICSGLTGHAEVVRIVYDPAKNSYENLLKLFW 117          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_AZOVD (Peptide methionine sulfoxide reductase msrA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            G + A FG GCFWG E  F + PGV  T VGY+ G   NP+YE+VCSG T H EVV V +DP+E  + TLL   W
Sbjct:   48 GMRQALFGLGCFWGAERRFWQQPGVWTTAVGYAGGLTPNPTYEEVCSGLTGHTEVVLVVFDPQETDYRTLLKVFW 122          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_SHIDS (Peptide methionine sulfoxide reductase msrA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++P V  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPSVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQIFW 116          
The following BLAST results are available for this feature:
BLAST of CN189021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
MSRA_PSEA88.574e-1743.52Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_ENTS88.574e-1752.00Peptide methionine sulfoxide reductase msrA OS=Ent... [more]
MSRA_BOVIN8.574e-1752.00Peptide methionine sulfoxide reductase OS=Bos taur... [more]
MSRA_OCHA41.120e-1646.60Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_VIBCM1.463e-1651.28Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_VIBCH1.463e-1651.28Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_VIBC31.463e-1651.28Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_PHOLL1.463e-1645.56Peptide methionine sulfoxide reductase msrA OS=Pho... [more]
MSRA_AZOVD1.463e-1653.33Peptide methionine sulfoxide reductase msrA OS=Azo... [more]
MSRA_SHIDS1.910e-1644.00Peptide methionine sulfoxide reductase msrA OS=Shi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189021 ID=CN189021; Name=CN189021; organism=Citrus sinensis; type=EST; length=738bp
CTTGAAGGTGTAACGTTAAATTTGCTGACACTATGGAGATTGATAGGGAA
TTTTATTTTAAGTTATTTTGGAAAAATGGAAAGAGGATGAGGAAATAATA
ATATTTTAATTTAAAGTAACTTGAAAAAAAATTCAATCCAATCTCGATTG
AGCAAATCGACACGAGGTAACTGAATTTTCTCAACACGTCTCCAAATCTT
TAAAACCAGCAATGGTCTTAAACAAGTGTCTTTCCATAACCACCACCACC
ACCACCGTCGCCGCTACCATCTCCAAATCGCCACTTCTTCTAATCTCCTC
TTCTCTCTCTTCACCAAAGAACCCTCTTTCTCTCTCTAAACCCAATCCGA
CCCATTTCCCTATCACTGCCCGACCCATTTCCACCCACTACAAGCCCCCC
ATGAACATCCTCAACAAGCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCC
CGCGTCCACGGAGAACTCCGCCATCGCTCAGGGCCCCGACGACGACGTTC
CGGCCCCCGGTCAGCAGTTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGC
GTCGAATTGGCGTTCCAGAGAGTGCCAGGTGTCACCAAGACCGAAGTTGG
GTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTGCAGTG
GGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTAAAGAG
TGTAGTTTCGATACTTTGCTTGATAATGTTTGGGCTCG
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