CN189021

Overview
NameCN189021
Unique NameCN189021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_RAT (Peptide methionine sulfoxide reductase OS=Rattus norvegicus GN=Msra PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 46/101 (45.54%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  449 PASTENSAIA-----QGPDDDVPAP-GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            P  TE+  +A      G     P P G Q A FG GCFWG E  F  + GV  T+VG++ GY  NP+Y++VCS  T H EVVRV Y P+  SF+ LL   W
Sbjct:   36 PGRTESIPVAAKHHVSGNRTVEPFPEGTQMAVFGMGCFWGAERKFWLLKGVYSTQVGFAGGYTRNPTYKEVCSEKTGHAEVVRVVYRPEHVSFEELLKVFW 136          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_YERE8 (Peptide methionine sulfoxide reductase msrA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 45/100 (45.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T +  +  G        G + A F  GCFWGVE  F + PGV  T  GYS GY  NP+Y +VCSG T H EVVRV +DP   S+  LL   W
Sbjct:   19 RLTPMPVATLH--VVNGHSMTHVPEGMEVAIFAMGCFWGVERLFWQQPGVYSTAAGYSGGYTPNPTYHEVCSGRTAHAEVVRVVFDPAIISYKQLLQIFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_OCHAN (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi GN=msrA PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 45/100 (45.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R  P P S  +   ++   +  P  G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  S D LL   W
Sbjct:   23 RAQPIPTSATHFVNSRPLKEPWPE-GYKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFW 121          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_HUMAN (Peptide methionine sulfoxide reductase OS=Homo sapiens GN=MSRA PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 39/75 (52.00%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            G Q A FG GCFWG E  F  + GV  T+VG++ GY  NP+Y++VCS  T H EVVRV Y P+  SF+ LL   W
Sbjct:   64 GTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFW 138          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA1_ANASP (Peptide methionine sulfoxide reductase msrA 1 OS=Anabaena sp. (strain PCC 7120) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A FGAGCFWGVE AF++V GV  T VGY  G+  NP Y DV S  T H EVV+++YDP+  S++ LL   W
Sbjct:   15 ATFGAGCFWGVEAAFRKVKGVVSTSVGYMGGHFPNPCYLDVLSRITGHAEVVQIEYDPQLVSYEDLLAVFW 85          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_STRGG (Peptide methionine sulfoxide reductase msrA OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 42/100 (42.00%), Postives = 50/100 (50.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            RP P+        +   P       G + A F  GCFWG E  F +  GV  T VGY  GY  NPSYE+ CSG T H E VRV +DP   S++ LL   W
Sbjct:   20 RPVPEFTVPSRHTVLGNPLVGPYPDGLEVADFALGCFWGAERKFWQTEGVWTTLVGYQGGYTENPSYEEACSGLTGHTEAVRVVFDPAVVSYEELLKLFW 119          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_RHOCS (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 45/97 (46.39%), Postives = 53/97 (54.64%), Query Frame = 2
Query:  446 DPASTENSAIAQGPDDDVPAP-GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            +P    N     G     P P G + A FG GCFWGVE  F +VPGV  T  GY+ G   NP+YE+VC+G T H EVV V YDP   S+  LL   W
Sbjct:   23 EPLPVGNIHAVNGHPLKPPFPAGLETAVFGMGCFWGVERKFWQVPGVYSTAAGYAGGPTPNPTYEEVCTGRTGHAEVVLVVYDPATVSYAELLKVFW 119          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_GEOSL (Peptide methionine sulfoxide reductase msrA OS=Geobacter sulfurreducens GN=msrA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  521 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            A FGAGCFW VE  F+RVPGV  T  GY  G+  +P+YE+VCS TT H EVV V +DP   ++D LL   W
Sbjct:   10 ATFGAGCFWHVEEEFRRVPGVVSTLAGYMGGWKEHPTYEEVCSKTTGHAEVVEVTFDPAAVTYDHLLRVFW 80          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL6 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6 GN=msrA PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++PGV  T   Y+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAVYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_ECO5E (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++ GV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW 116          
The following BLAST results are available for this feature:
BLAST of CN189021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
MSRA_RAT2.495e-1645.54Peptide methionine sulfoxide reductase OS=Rattus n... [more]
MSRA_YERE83.258e-1645.00Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_OCHAN3.258e-1645.00Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_HUMAN3.258e-1652.00Peptide methionine sulfoxide reductase OS=Homo sap... [more]
MSRA1_ANASP3.258e-1654.93Peptide methionine sulfoxide reductase msrA 1 OS=A... [more]
MSRA_STRGG4.255e-1642.00Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_RHOCS4.255e-1646.39Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_GEOSL4.255e-1654.93Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_ECOL64.255e-1644.00Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO5E4.255e-1644.00Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189021 ID=CN189021; Name=CN189021; organism=Citrus sinensis; type=EST; length=738bp
CTTGAAGGTGTAACGTTAAATTTGCTGACACTATGGAGATTGATAGGGAA
TTTTATTTTAAGTTATTTTGGAAAAATGGAAAGAGGATGAGGAAATAATA
ATATTTTAATTTAAAGTAACTTGAAAAAAAATTCAATCCAATCTCGATTG
AGCAAATCGACACGAGGTAACTGAATTTTCTCAACACGTCTCCAAATCTT
TAAAACCAGCAATGGTCTTAAACAAGTGTCTTTCCATAACCACCACCACC
ACCACCGTCGCCGCTACCATCTCCAAATCGCCACTTCTTCTAATCTCCTC
TTCTCTCTCTTCACCAAAGAACCCTCTTTCTCTCTCTAAACCCAATCCGA
CCCATTTCCCTATCACTGCCCGACCCATTTCCACCCACTACAAGCCCCCC
ATGAACATCCTCAACAAGCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCC
CGCGTCCACGGAGAACTCCGCCATCGCTCAGGGCCCCGACGACGACGTTC
CGGCCCCCGGTCAGCAGTTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGC
GTCGAATTGGCGTTCCAGAGAGTGCCAGGTGTCACCAAGACCGAAGTTGG
GTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTGCAGTG
GGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTAAAGAG
TGTAGTTTCGATACTTTGCTTGATAATGTTTGGGCTCG
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