CN189021

Overview
NameCN189021
Unique NameCN189021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_ECO57 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 GN=msrA PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++ GV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_ECO27 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R +P P +T + A+      +VP  G + A F  GCFWGVE  F ++ GV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL   W
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLHGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_PSESM (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. tomato GN=msrA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 2
Query:  515 QFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            +FA FG GCFWG E    +  GV  T  GY+ G+  NP+YE+VCSG T H EVV V Y+P++ S+D+LL   W
Sbjct:   50 EFAIFGLGCFWGAERRLWQQEGVVSTVAGYAGGFTPNPTYEEVCSGLTGHTEVVLVVYEPEKISYDSLLKVFW 122          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_GEOMG (Peptide methionine sulfoxide reductase msrA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=msrA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 2
Query:  506 PGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            P  + A FGAGCFW VE  F+RV GV  T  GY  G+  +P+YE+VCS  T H EVV V YDP   S+D LL   W
Sbjct:    5 PELEKATFGAGCFWHVEAEFRRVSGVVATHAGYMGGWKDHPTYEEVCSKETGHAEVVEVVYDPARVSYDELLRIFW 80          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_MOUSE (Peptide methionine sulfoxide reductase OS=Mus musculus GN=Msra PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  434 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            R  P P + ++        +  P  G Q A FG GCFWG E  F  + GV  T+VG++ G+  NP+Y++VCS  T H EVVRV Y P+  SF+ LL   W
Sbjct:   38 RTEPIPVTAKHHVSGNRTVEPFPE-GTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKVFW 136          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  509 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            G + A FG GCFWG E  F +  GV  T VGY+ G   NP+Y++VC+G T HNEVV V +DPK  S++ LL   W
Sbjct:   46 GLETAMFGLGCFWGAERKFWQCEGVYTTAVGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFW 120          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA2_ANASP (Peptide methionine sulfoxide reductase msrA 2 OS=Anabaena sp. (strain PCC 7120) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  422 GFGFR---PSPDPASTENSAIAQGPDDDV--------PAP-GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            GFG +   P+P+ A    + I   P +          P P G + A FG GCFWG E  F +  GV  T VGY+ G+  NP+Y++VC+G T HNEVV V +DPK  S+  LL   W
Sbjct:    5 GFGKKLALPTPEKALPGRAQIMPVPANHYVNKNPLKPPFPDGFEKALFGLGCFWGAERKFWQQQGVYSTAVGYAAGFTPNPTYDEVCTGLTGHNEVVLVVFDPKVISYTQLLKVFW 120          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_PHOPR (Peptide methionine sulfoxide reductase msrA OS=Photobacterium profundum GN=msrA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  530 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            G GCFWG E  F  +PG+  T VGYS G+  NP+YE+VCSG T H+EVVR+ YDP   S + +L   W
Sbjct:   49 GMGCFWGAERLFWNLPGIYSTAVGYSGGFTPNPTYEEVCSGKTGHSEVVRIIYDPLIISLEQILTLFW 116          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA_METMP (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis GN=msrA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  527 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            FG GCFWG E  F+++ GV  TEVG+  G + NP+Y  VC G + H EVV++ YDP+  S+D LLD  W
Sbjct:    9 FGMGCFWGAEEVFRKINGVVSTEVGFMGGTIKNPTYGQVCRGKSGHIEVVKIDYDPEIISYDELLDLFW 77          
BLAST of CN189021 vs. ExPASy Swiss-Prot
Match: MSRA1_CAUCR (Peptide methionine sulfoxide reductase msrA 1 OS=Caulobacter crescentus GN=msrA1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 42/96 (43.75%), Postives = 53/96 (55.21%), Query Frame = 2
Query:  449 PASTENSAIAQGPDDDVPAP-GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDNVW 733
            P  T  +    G     P P G + A    GCFWGVE  F +VPGV  T  GY+ G   NP+YE+VC+G T H EVV V +DPK  +++ LL   W
Sbjct:   23 PIPTAQTHFVNGHALKGPYPEGLETAIVAMGCFWGVERVFWKVPGVYVTAAGYAAGITPNPTYEEVCTGRTGHTEVVLVVFDPKVVTYEALLKTFW 118          
The following BLAST results are available for this feature:
BLAST of CN189021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
MSRA_ECO574.255e-1644.00Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO274.255e-1644.00Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_PSESM5.558e-1650.68Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_GEOMG5.558e-1652.63Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_MOUSE7.259e-1642.00Peptide methionine sulfoxide reductase OS=Mus musc... [more]
MSRA_CYAP87.259e-1650.67Peptide methionine sulfoxide reductase msrA OS=Cya... [more]
MSRA2_ANASP7.259e-1641.38Peptide methionine sulfoxide reductase msrA 2 OS=A... [more]
MSRA_PHOPR9.480e-1652.94Peptide methionine sulfoxide reductase msrA OS=Pho... [more]
MSRA_METMP9.480e-1650.72Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA1_CAUCR9.480e-1643.75Peptide methionine sulfoxide reductase msrA 1 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189021 ID=CN189021; Name=CN189021; organism=Citrus sinensis; type=EST; length=738bp
CTTGAAGGTGTAACGTTAAATTTGCTGACACTATGGAGATTGATAGGGAA
TTTTATTTTAAGTTATTTTGGAAAAATGGAAAGAGGATGAGGAAATAATA
ATATTTTAATTTAAAGTAACTTGAAAAAAAATTCAATCCAATCTCGATTG
AGCAAATCGACACGAGGTAACTGAATTTTCTCAACACGTCTCCAAATCTT
TAAAACCAGCAATGGTCTTAAACAAGTGTCTTTCCATAACCACCACCACC
ACCACCGTCGCCGCTACCATCTCCAAATCGCCACTTCTTCTAATCTCCTC
TTCTCTCTCTTCACCAAAGAACCCTCTTTCTCTCTCTAAACCCAATCCGA
CCCATTTCCCTATCACTGCCCGACCCATTTCCACCCACTACAAGCCCCCC
ATGAACATCCTCAACAAGCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCC
CGCGTCCACGGAGAACTCCGCCATCGCTCAGGGCCCCGACGACGACGTTC
CGGCCCCCGGTCAGCAGTTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGC
GTCGAATTGGCGTTCCAGAGAGTGCCAGGTGTCACCAAGACCGAAGTTGG
GTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTGCAGTG
GGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTAAAGAG
TGTAGTTTCGATACTTTGCTTGATAATGTTTGGGCTCG
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