CN189018

Overview
NameCN189018
Unique NameCN189018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.116e-20
Identity = 46/97 (47.42%), Postives = 70/97 (72.16%), Query Frame = -3
Query:  165 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 452
            +  +KPL DRVF+K++E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_PROMA (10 kDa chaperonin OS=Prochlorococcus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.116e-20
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 452
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V  VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.116e-20
Identity = 46/94 (48.94%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  171 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 452
            +  +KPL DR+F+KV+ AEE TAGG+LL + ++EKP IG V+AVGPG  +++G+R  L +  G+ V+YSKYAG D K S G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLS-GEDYVLLSEKDILA 100          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_SYNP6 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 452
            +  + PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K G+D  +Y+ L   +++AV++
Sbjct:    8 VSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVVA 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_SYNE7 (10 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groS PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 452
            +  + PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K G+D  +Y+ L   +++AV++
Sbjct:    8 VSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVVA 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_BEUC1 (10 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.070e-20
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            +KPL DR+ +K  EAE+TTA GL++ + +KEKP  G V+A+GPG +D+ GNR P+ +A G+ V+YSKY G + K + G  Y+ L A +V+AV+
Sbjct:    5 IKPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVKYA-GQEYLILSARDVLAVV 96          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 43/100 (43.00%), Postives = 70/100 (70.00%), Query Frame = -3
Query:  162 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 461
            T  +  +KPL +RVF+KV+E+EE TAGG+LL +++KEKP +G V++ GPG  +++G R  + +  G+ V+YSKYAG D K   G  Y+ L   +++A+++
Sbjct:    5 TLSVSTVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIK-LGGDEYVLLAEKDILAIVN 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_SYNPX (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 44/97 (45.36%), Postives = 69/97 (71.13%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 452
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K   G  ++ L   +++A+++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK-LGGDEFVLLTEKDILAIVN 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_PROMM (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = -3
Query:  162 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 452
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K S    Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLST-DEYVLLSEKDILAVVN 103          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_PROM9 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9312) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 45/96 (46.88%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  165 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 452
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of CN189018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_SYNS33.116e-2047.4210 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_PROMA3.116e-2048.9810 kDa chaperonin OS=Prochlorococcus marinus GN=gr... [more]
CH10_CYAA53.116e-2048.9410 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5... [more]
CH10_SYNP64.070e-2046.9410 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_SYNE74.070e-2046.9410 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH10_BEUC14.070e-2048.3910 kDa chaperonin OS=Beutenbergia cavernae (strain... [more]
CH10_TRIEI5.316e-2043.0010 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_SYNPX5.316e-2045.3610 kDa chaperonin OS=Synechococcus sp. (strain WH8... [more]
CH10_PROMM5.316e-2046.3910 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM95.316e-2046.8810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189018 ID=CN189018; Name=CN189018; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTCCCTTTTTTTTTTTTTTTTCGATTGATCAAGCTGCAATTCT
TTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCTTGAGGCAACTC
AACCATAAAATTCAATTCACTAATACATATAAAGCCTCCCTCAAGTAAAC
ACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCAAT
GTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATACTTGGAAT
ACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCCTATTACCTTCC
TCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCAATGGAAGGTTT
CTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTCAG
CCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAGATCCTTG
ATTTCATCTGTTTCAAGAATGCCAACTACATCATCCTCCCTCAATATGAG
ATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATACTTCTAATAGA
TGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTT
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