CN189018

Overview
NameCN189018
Unique NameCN189018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_NOCSJ (10 kDa chaperonin OS=Nocardioides sp. (strain BAA-499 / JS614) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.316e-20
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL DR+ +K  +AE+TTA GL++ + +KEKP  G V+A+GPG +D+ GNR PL +  G+ V+YSKY G + K + G  Y+ L A +V+AV+S
Sbjct:    4 NIKPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVTVGDKVIYSKYGGTEVKYA-GEEYLILSARDVLAVVS 97          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.067e-20
Identity = 47/97 (48.45%), Postives = 70/97 (72.16%), Query Frame = -3
Query:  165 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 452
            +  +KPL+DRVF+KV  +EE TAGGL L + +KEKP +G V+A+GPG  +E+G+R+ L I  G+ V+YSKYAG D K G++   Y+ L   +++AV+
Sbjct:    8 VSTVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTE--EYVLLSEKDILAVV 102          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MICLC (10 kDa chaperonin OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=groS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.067e-20
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = -3
Query:  162 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 443
            +KPL DR+ ++  EAE+TTA GL++ + +KEKP  G V+AVGPG + E GNR P+ +A G+ V+YSKY G + K   G  Y+ L A +V+AV++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLVIPDTAKEKPQEGQVVAVGPGRVAENGNRVPVDVAEGDVVLYSKYGGTEVK-VGGEEYLVLSARDVLAVVT 97          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  171 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 452
            +  +KPL DRVF+KV+ AEE TAGG+LL + +KEKP IG V+ VGPG  +++G   P+ +  G+ V+YSKYAG D K   G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIK-LGGDDYVLLTEKDILA 100          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_CYAP8 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 8801) GN=groS PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = -3
Query:  165 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 452
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP IG ++ VGPG  +++G+R    +  G+ V+YSKYAG D K   G +Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIK-LGGEDYVLLSEKDILAVV 102          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.547e-19
Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++ +R  +++AV++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.547e-19
Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++ +R  +++AV++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_ARTAT (10 kDa chaperonin OS=Arthrobacter aurescens (strain TC1) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.547e-19
Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            +KPL DR+ ++  EAE+TTA GL++ ++++EKP  G V+A+GPG  D+ GNR P+ +A G+ V+YSKY G + K + G  Y+ L A +V+A++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAIGPGRFDDNGNRVPVDVAVGDVVIYSKYGGTEVK-TGGNEYLVLSARDVLAIV 96          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCTU (10 kDa chaperonin OS=Mycobacterium tuberculosis GN=groS PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCTA (10 kDa chaperonin OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
The following BLAST results are available for this feature:
BLAST of CN189018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_NOCSJ5.316e-2047.3710 kDa chaperonin OS=Nocardioides sp. (strain BAA-... [more]
CH10_NOSP79.067e-2048.4510 kDa chaperonin OS=Nostoc punctiforme (strain AT... [more]
CH10_MICLC9.067e-2047.8710 kDa chaperonin OS=Micrococcus luteus (strain AT... [more]
CH10_SYNY31.184e-1947.8710 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_CYAP81.184e-1945.8310 kDa chaperonin OS=Cyanothece sp. (strain PCC 88... [more]
CH10_LAWIP1.547e-1946.3210 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH10_LAWIN1.547e-1946.3210 kDa chaperonin OS=Lawsonia intracellularis GN=g... [more]
CH10_ARTAT1.547e-1945.1610 kDa chaperonin OS=Arthrobacter aurescens (strai... [more]
CH10_MYCTU2.020e-1947.9210 kDa chaperonin OS=Mycobacterium tuberculosis GN... [more]
CH10_MYCTA2.020e-1947.9210 kDa chaperonin OS=Mycobacterium tuberculosis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189018 ID=CN189018; Name=CN189018; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTCCCTTTTTTTTTTTTTTTTCGATTGATCAAGCTGCAATTCT
TTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCTTGAGGCAACTC
AACCATAAAATTCAATTCACTAATACATATAAAGCCTCCCTCAAGTAAAC
ACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCAAT
GTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATACTTGGAAT
ACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCCTATTACCTTCC
TCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCAATGGAAGGTTT
CTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTCAG
CCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAGATCCTTG
ATTTCATCTGTTTCAAGAATGCCAACTACATCATCCTCCCTCAATATGAG
ATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATACTTCTAATAGA
TGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTT
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