CN189018

Overview
NameCN189018
Unique NameCN189018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCS2 (10 kDa chaperonin OS=Mycobacterium smegmatis GN=groS PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCBT (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCBP (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCBO (10 kDa chaperonin OS=Mycobacterium bovis GN=groS PE=1 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 2.020e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_LISW6 (10 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.638e-19
Identity = 44/92 (47.83%), Postives = 69/92 (75.00%), Query Frame = -3
Query:  168 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 443
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + E G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLENGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_DESDA (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.638e-19
Identity = 43/93 (46.24%), Postives = 66/93 (70.97%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            LKPLNDRV +K  E EE TAGGL + + +KEKPS G V+AVGPG + + G R  L++  G+ V+++KYAG + K  DG +++ +R  +++A++
Sbjct:    3 LKPLNDRVLVKRLETEEKTAGGLYIPDTAKEKPSKGQVVAVGPGKVGDNGERTALAVKAGDEVLFNKYAGTEVK-LDGVDHLVMREEDILAII 94          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 45/100 (45.00%), Postives = 68/100 (68.00%), Query Frame = -3
Query:  165 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 461
            T  +  LKPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG + K GSD   Y+ L   +++A++
Sbjct:    5 TLNVSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSD--EYVLLAERDILAIV 102          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCUA (10 kDa chaperonin OS=Mycobacterium ulcerans (strain Agy99) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 46/96 (47.92%), Postives = 68/96 (70.83%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K   G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YGGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCMM (10 kDa chaperonin OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 46/96 (47.92%), Postives = 68/96 (70.83%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K   G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YGGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 43/94 (45.74%), Postives = 67/94 (71.28%), Query Frame = -3
Query:  165 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 446
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG + E+G    +++  G+TV++SKYAG + K  DG  ++ +R  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIK-LDGVEHLVMREDDILAII 94          
The following BLAST results are available for this feature:
BLAST of CN189018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_MYCS22.020e-1947.9210 kDa chaperonin OS=Mycobacterium smegmatis GN=gr... [more]
CH10_MYCBT2.020e-1947.9210 kDa chaperonin OS=Mycobacterium bovis (strain B... [more]
CH10_MYCBP2.020e-1947.9210 kDa chaperonin OS=Mycobacterium bovis (strain B... [more]
CH10_MYCBO2.020e-1947.9210 kDa chaperonin OS=Mycobacterium bovis GN=groS P... [more]
CH10_LISW62.638e-1947.8310 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH10_DESDA2.638e-1946.2410 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_SYNJA3.446e-1945.0010 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]
CH10_MYCUA3.446e-1947.9210 kDa chaperonin OS=Mycobacterium ulcerans (strai... [more]
CH10_MYCMM3.446e-1947.9210 kDa chaperonin OS=Mycobacterium marinum (strain... [more]
CH10_DESVM3.446e-1945.7410 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189018 ID=CN189018; Name=CN189018; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTCCCTTTTTTTTTTTTTTTTCGATTGATCAAGCTGCAATTCT
TTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCTTGAGGCAACTC
AACCATAAAATTCAATTCACTAATACATATAAAGCCTCCCTCAAGTAAAC
ACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCAAT
GTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATACTTGGAAT
ACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCCTATTACCTTCC
TCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCAATGGAAGGTTT
CTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTCAG
CCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAGATCCTTG
ATTTCATCTGTTTCAAGAATGCCAACTACATCATCCTCCCTCAATATGAG
ATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATACTTCTAATAGA
TGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTT
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