CN189018

Overview
NameCN189018
Unique NameCN189018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_BACCR (10 kDa chaperonin OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=groS PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            LKPL DRV I++ +AEE TA G++L + +KEKP  G V+AVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_BACC4 (10 kDa chaperonin OS=Bacillus cereus (strain B4264) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            LKPL DRV I++ +AEE TA G++L + +KEKP  G V+AVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_BACC2 (10 kDa chaperonin OS=Bacillus cereus (strain G9842) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            LKPL DRV I++ +AEE TA G++L + +KEKP  G V+AVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH101_RHOBA (10 kDa chaperonin 1 OS=Rhodopirellula baltica GN=groS1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 45/92 (48.91%), Postives = 68/92 (73.91%), Query Frame = -3
Query:  171 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 446
            +L+PL+DRV ++ +EAEETTAGG++L +++KEKP  G V+AVGPG L + GNR  LS++ G+ V+Y KY G++ +  DG     LR S+++A
Sbjct:    8 NLRPLDDRVVVQPSEAEETTAGGIVLPDSAKEKPQRGTVVAVGPGKLLDSGNRGELSVSVGDVVIYGKYGGSEIE-VDGHEMKILRESDILA 98          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCVP (10 kDa chaperonin OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 44/96 (45.83%), Postives = 68/96 (70.83%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCPA (10 kDa chaperonin OS=Mycobacterium paratuberculosis GN=groS PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCGI (10 kDa chaperonin OS=Mycobacterium gilvum (strain PYR-GCK) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 44/96 (45.83%), Postives = 68/96 (70.83%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCAV (10 kDa chaperonin OS=Mycobacterium avium GN=groS PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_MYCA1 (10 kDa chaperonin OS=Mycobacterium avium (strain 104) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = -3
Query:  162 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_ANASP (10 kDa chaperonin OS=Anabaena sp. (strain PCC 7120) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 44/97 (45.36%), Postives = 69/97 (71.13%), Query Frame = -3
Query:  165 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 452
            +  +KPL DRVF+KV+ +EE TAGGL L + +KEKP +G V+A+G G  +++G+R+ L +  G+ V+YSKYAG D K G++   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSASEEKTAGGLYLPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDKVLYSKYAGTDVKLGTE--EYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of CN189018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_BACCR1.309e-1848.3910 kDa chaperonin OS=Bacillus cereus (strain ATCC ... [more]
CH10_BACC41.309e-1848.3910 kDa chaperonin OS=Bacillus cereus (strain B4264... [more]
CH10_BACC21.309e-1848.3910 kDa chaperonin OS=Bacillus cereus (strain G9842... [more]
CH101_RHOBA1.309e-1848.9110 kDa chaperonin 1 OS=Rhodopirellula baltica GN=g... [more]
CH10_MYCVP1.710e-1845.8310 kDa chaperonin OS=Mycobacterium vanbaalenii (st... [more]
CH10_MYCPA1.710e-1846.8810 kDa chaperonin OS=Mycobacterium paratuberculosi... [more]
CH10_MYCGI1.710e-1845.8310 kDa chaperonin OS=Mycobacterium gilvum (strain ... [more]
CH10_MYCAV1.710e-1846.8810 kDa chaperonin OS=Mycobacterium avium GN=groS P... [more]
CH10_MYCA11.710e-1846.8810 kDa chaperonin OS=Mycobacterium avium (strain 1... [more]
CH10_ANASP1.710e-1845.3610 kDa chaperonin OS=Anabaena sp. (strain PCC 7120... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189018 ID=CN189018; Name=CN189018; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTCCCTTTTTTTTTTTTTTTTCGATTGATCAAGCTGCAATTCT
TTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCTTGAGGCAACTC
AACCATAAAATTCAATTCACTAATACATATAAAGCCTCCCTCAAGTAAAC
ACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCAAT
GTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATACTTGGAAT
ACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCCTATTACCTTCC
TCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCAATGGAAGGTTT
CTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTCAG
CCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAGATCCTTG
ATTTCATCTGTTTCAAGAATGCCAACTACATCATCCTCCCTCAATATGAG
ATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATACTTCTAATAGA
TGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTT
back to top