CN189018

Overview
NameCN189018
Unique NameCN189018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_NOCFA (10 kDa chaperonin OS=Nocardia farcinica GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.917e-18
Identity = 44/95 (46.32%), Postives = 66/95 (69.47%), Query Frame = -3
Query:  165 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 446
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +  G+TV+YSKY G + K   G  Y+ L A +V+AV+
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVQEGDTVIYSKYGGTEIK-YQGEEYLILSARDVLAVV 98          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_EXIS2 (10 kDa chaperonin OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.917e-18
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  168 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 443
            LKPL DR+ I+V + EETT GG++L  ++KEKP  G V+AVG G + E+G R PL +  G+ V+Y++YAG++ K  DG  Y+ LR S+++AV
Sbjct:    2 LKPLGDRIVIEVVKKEETTLGGIVLPGSAKEKPQEGKVVAVGTGRVTEQGVRVPLEVNVGDHVIYAQYAGSEVK-VDGNEYLILRESDILAV 92          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_STRLI (10 kDa chaperonin OS=Streptomyces lividans GN=groS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.810e-18
Identity = 43/93 (46.24%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            +KPL DR+ ++  +AE+TTA GL++ + +KEKP  G+V+AVGPG   E+GNR PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+A++
Sbjct:   10 IKPLEDRIVVQPLDAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRF-EDGNRLPLDVSVGDVVLYSKYGGTEVK-YNGEEYLVLSARDVLAIV 100          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_STRCO (10 kDa chaperonin OS=Streptomyces coelicolor GN=groS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.810e-18
Identity = 43/93 (46.24%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            +KPL DR+ ++  +AE+TTA GL++ + +KEKP  G+V+AVGPG   E+GNR PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+A++
Sbjct:   10 IKPLEDRIVVQPLDAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRF-EDGNRLPLDVSVGDVVLYSKYGGTEVK-YNGEEYLVLSARDVLAIV 100          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_STRAW (10 kDa chaperonin OS=Streptomyces avermitilis GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.975e-18
Identity = 43/93 (46.24%), Postives = 66/93 (70.97%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            +KPL DR+ ++  +AE+TTA GL++ + +KEKP  G+V+AVGPG   E+GNR PL +  G+ V+YSKY G + K  +G  Y+ L A +V+A++
Sbjct:   10 IKPLEDRIVVQPLDAEQTTASGLVIPDTAKEKPQEGVVLAVGPGRF-EDGNRLPLDVTVGDVVLYSKYGGTEVK-YNGEEYLVLSARDVLAIV 100          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_DESDG (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.975e-18
Identity = 42/94 (44.68%), Postives = 67/94 (71.28%), Query Frame = -3
Query:  165 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 446
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G VIAVGPG   ++G    +++  G+ V+++KYAG + K  DG +++ +R  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVIAVGPGKTADDGKVIAMTVKTGDVVLFNKYAGTEVK-LDGVDHLVMREDDILAII 94          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_EXISA (10 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.498e-18
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  165 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 443
            LKPL DRV I+V E EE T GG++L + +KEKP  G V+AVG G + +EG R  L +   + V+YSKYAG + K  DG  Y+ +R S+++A++
Sbjct:    2 LKPLGDRVIIEVVEKEEKTIGGIVLPDTAKEKPQQGKVVAVGTGRVTDEGKRIDLDVKENDLVIYSKYAGTEVK-HDGKEYLIVRESDILAIV 93          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_COREF (10 kDa chaperonin OS=Corynebacterium efficiens GN=groS PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.498e-18
Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  165 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 446
            ++KPL D++ +++ EAE TTA GL++ +++KEKP    VIAVGPG  DE+G R PL I   + V++S+Y G + K  DG  Y+ L A +++A++
Sbjct:    5 NIKPLEDKILVQINEAETTTASGLVIPDSAKEKPQEATVIAVGPGRFDEKGERIPLDIKEDDVVIFSRYGGTEIK-FDGVEYLLLSARDILAIV 97          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_CORK4 (10 kDa chaperonin OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  165 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 446
            ++KPL D++ +++ EAE TTA GL++ + +KEKP    V+AVGPG  DE G R P+ +A G+ V++SKY G + K + G  Y+ L   +V+AV+
Sbjct:    5 NIKPLEDKLLVQIVEAETTTASGLVIPDTAKEKPQEATVVAVGPGRTDENGKRVPMDVAEGDVVIFSKYGGTEIKYA-GEEYLILSQRDVLAVV 97          
BLAST of CN189018 vs. ExPASy Swiss-Prot
Match: CH10_CORDI (10 kDa chaperonin OS=Corynebacterium diphtheriae GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 42/94 (44.68%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  165 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 446
            ++KPL DRV ++++EAE TTA GL++ +++KEKP  G+V+A GPG  D + +R P+ I  G+TV++SKY G + K  +G  Y+ L A +V+A++
Sbjct:    5 NIKPLEDRVLVQISEAETTTASGLVIPDSAKEKPQEGVVVAAGPGRFDGD-DRVPMDIKEGDTVVFSKYGGTELK-YNGEEYLLLNARDVLAII 96          
The following BLAST results are available for this feature:
BLAST of CN189018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_NOCFA2.917e-1846.3210 kDa chaperonin OS=Nocardia farcinica GN=groS PE... [more]
CH10_EXIS22.917e-1848.9110 kDa chaperonin OS=Exiguobacterium sibiricum (st... [more]
CH10_STRLI3.810e-1846.2410 kDa chaperonin OS=Streptomyces lividans GN=groS... [more]
CH10_STRCO3.810e-1846.2410 kDa chaperonin OS=Streptomyces coelicolor GN=gr... [more]
CH10_STRAW4.975e-1846.2410 kDa chaperonin OS=Streptomyces avermitilis GN=g... [more]
CH10_DESDG4.975e-1844.6810 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_EXISA6.498e-1847.3110 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH10_COREF6.498e-1843.6210 kDa chaperonin OS=Corynebacterium efficiens GN=... [more]
CH10_CORK48.487e-1843.6210 kDa chaperonin OS=Corynebacterium kroppenstedti... [more]
CH10_CORDI1.108e-1744.6810 kDa chaperonin OS=Corynebacterium diphtheriae G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189018 ID=CN189018; Name=CN189018; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTCCCTTTTTTTTTTTTTTTTCGATTGATCAAGCTGCAATTCT
TTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCTTGAGGCAACTC
AACCATAAAATTCAATTCACTAATACATATAAAGCCTCCCTCAAGTAAAC
ACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTAAAGCAAT
GTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATACTTGGAAT
ACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCCTATTACCTTCC
TCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCAATGGAAGGTTT
CTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTCTCCTCAG
CCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAGATCCTTG
ATTTCATCTGTTTCAAGAATGCCAACTACATCATCCTCCCTCAATATGAG
ATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATACTTCTAATAGA
TGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTT
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