CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++KPLGDRV VKI   EEKT GGI LP TA+ KPQ GEVV VG GK+    ++    V  G +V+YSKYAGT+++L    +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_LEPIN (10 kDa chaperonin OS=Leptospira interrogans GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLIPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_LEPIC (10 kDa chaperonin OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=groS PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            SIKPLGDRVLV+ +   E+  G IF+P TA+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLIPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_GEOBB (10 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 44/94 (46.81%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +++PL DR++VK       T GG+++P TA+ KPQ GEVVAVG GK     K+  I +K G +V++ KYAG+E++L G + LI+REDD++G++E
Sbjct:    2 NLRPLQDRIIVKRVEEATMTAGGLYIPETAKEKPQQGEVVAVGNGKRGEDGKVYPIDLKVGDKVLFGKYAGSEVKLEGEDFLIMREDDILGVVE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLOCE (10 kDa chaperonin OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            IKPLGDRV++K+   EE T  GI LP +A+ KPQ  E+VAVG G  V   ++ + VK G +V+ SKY+GTE++ +G  + IL++ D++ I+E
Sbjct:    3 IKPLGDRVVIKMLESEETTKSGIVLPGSAKEKPQVAEIVAVGPGTVVDGKEVKMEVKVGDRVLTSKYSGTEVKFDGQEYTILKQGDILAIVE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_ACIF5 (10 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 42/93 (45.16%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++PL DRV+++    E+KT GGI +P TA+ KP  GE+VA G GK +   K+  + VK G QV+++KYAGTE+++ G   L++REDD++ ++E
Sbjct:    3 LRPLHDRVVIRRLEEEQKTAGGIIIPDTAKEKPVRGEIVAAGHGKILEDGKVRALDVKTGDQVLFAKYAGTEIKVEGEELLVMREDDIMAVIE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_ACIF2 (10 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.251e-18
Identity = 42/93 (45.16%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++PL DRV+++    E+KT GGI +P TA+ KP  GE+VA G GK +   K+  + VK G QV+++KYAGTE+++ G   L++REDD++ ++E
Sbjct:    3 LRPLHDRVVIRRLEEEQKTAGGIIIPDTAKEKPVRGEIVAAGHGKILEDGKVRALDVKTGDQVLFAKYAGTEIKVEGEELLVMREDDIMAVIE 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_SYNS9 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9902) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++L    +++L E D++ I+
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKPNEDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAIV 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_SYNPW (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++L    +++L E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKANEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_SYNP6 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++ PLGDRV VK+   EEKT GGI LP  A+ KPQ GE+VAVG GK     ++    VK G +V+YSKYAGT+++L   ++++L E D++ ++
Sbjct:    9 STVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_SYNS37.251e-1848.9410 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_LEPIN7.251e-1846.2410 kDa chaperonin OS=Leptospira interrogans GN=gro... [more]
CH10_LEPIC7.251e-1846.2410 kDa chaperonin OS=Leptospira interrogans serogr... [more]
CH10_GEOBB7.251e-1846.8110 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH10_CLOCE7.251e-1846.7410 kDa chaperonin OS=Clostridium cellulolyticum (s... [more]
CH10_ACIF57.251e-1845.1610 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH10_ACIF27.251e-1845.1610 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH10_SYNS99.470e-1848.9410 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_SYNPW9.470e-1847.8710 kDa chaperonin OS=Synechococcus sp. (strain WH7... [more]
CH10_SYNP69.470e-1846.8110 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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