CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 46/94 (48.94%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++KPLG+RV VK+   EEKT GGI LP +A+ KPQ GEVV+ G GK     T+ ++ VK G +V+YSKYAGT+++L G  +++L E D++ I+
Sbjct:    9 STVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIKLGGDEYVLLAEKDILAIV 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVV 513
            T++KPLGDRV VK+   EEKT GGIFLP  A+ KPQ GEVVAVG GK     ++  + V  G +V+YSKYAGT+++L G   ++L E D++
Sbjct:    9 TTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDIL 99          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLOB8 (10 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +IKPLG+RV++K    EEKT  GI L  TA+ +PQ  EVVAVG G  V   ++ + VK G +V+YSKYAGTE++++G  + IL++DD++ I+E
Sbjct:    2 NIKPLGERVVIKKLEAEEKTKSGIVLTGTAKERPQEAEVVAVGPGAVVDGNRVAMEVKVGDKVLYSKYAGTEVKVDGEEYTILKQDDILAIVE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CHLPB (10 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++KPL DRV+VK    EEKT GG+++P T + KPQ GEVVAVG GK     + L++ V  G +V+Y KY+GTE+ + G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKVADSGQLLEMQVAVGNKVLYGKYSGTEVAVEGEDYLIMRESDIFAILD 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACHD (10 kDa chaperonin OS=Bacillus halodurans GN=groS PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV+++    EEKT  GI LP TA+ KPQ G VVAVG G+ T    K+ + VK G  VI+SKYAGTE++ +G  +LILRE D++ I+
Sbjct:    2 LKPLGDRVVIEQVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVTENGEKIALEVKEGDSVIFSKYAGTEVKYDGKEYLILRESDILAII 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK T    +  + VK G +V+YSKYAGTE++L G ++++L E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK T    +  + VK G +V+YSKYAGTE++L G ++++L E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLOPE (10 kDa chaperonin OS=Clostridium perfringens GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++  G  + ILR+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLOP1 (10 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++  G  + ILR+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLONN (10 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 46/92 (50.00%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ  E+VAVG G  V   ++ + VK G +V++SKY+GTE++L+G  + ILR++D++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVRMEVKVGDKVLFSKYSGTEVKLDGEEYTILRQNDILAIVE 94          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_TRIEI1.321e-1948.9410 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_MICAN1.321e-1952.7510 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_CLOB81.321e-1949.4610 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH10_CHLPB1.321e-1948.9410 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH10_BACHD1.321e-1953.2610 kDa chaperonin OS=Bacillus halodurans GN=groS P... [more]
CH10_THEVL1.726e-1950.0010 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB1.726e-1950.0010 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_CLOPE1.726e-1950.5410 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH10_CLOP11.726e-1950.5410 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_CLONN1.726e-1950.0010 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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