CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CAMJ8 (10 kDa chaperonin OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=groS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            + +PLG RVLVK     + T  GI +P  A+ KP  GEVVAV +  T         +  G +++++KY GTE++L+   +L+L  DD++GIL+
Sbjct:    2 NFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVSKEIT--------DIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK 86          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_STAS1 (10 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 32/94 (34.04%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILET 528
            +KPLG+RV+++    E+ T  GI L  +A+ K   G ++AVG G+ +   +++   V  G +V++ +YAGTE++     +LI+ E+D++ I+E+
Sbjct:    2 LKPLGNRVIIQKSEQEQTTKSGIVLTDSAKEKSNEGTIIAVGAGRILKDGSRVAPEVNEGDKVVFQQYAGTEVKRGDETYLIVNEEDILAIIES 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_PSEPF (10 kDa chaperonin OS=Pseudomonas fluorescens (strain Pf0-1) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 33/94 (35.11%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LELNGANHLILREDDVVGILE 525
            ++PL DRV+++    E+KT GGI LP +A  K   GE++AVG GK +   ++  +SVK G +V++  Y+G+  ++++G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEEKKTAGGIVLPGSAAEKANHGEILAVGPGKALESGEVRALSVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVIE 96          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CAMC1 (10 kDa chaperonin OS=Campylobacter concisus (strain 13826) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            + +PLG RVLV+     + T  GI +P  A+ KP +GEV AVG             VK G +V+++KYAGTE+ L+   +L+L  DD++G+++
Sbjct:    2 NFQPLGKRVLVERVEETKTTASGIIIPDNAKEKPLSGEVKAVGAEAE--------GVKVGEKVVFAKYAGTEVNLDDKTYLVLNIDDILGVIK 86          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_MACCJ (10 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 32/93 (34.41%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +KP G+RV+++    E  T  GI L  +A+ K   G VVAVG G+ +    +++I V  G +V+Y  + GTE++    ++++L+E+D++ I+E
Sbjct:    2 LKPYGNRVVIQKTERETTTASGIVLTDSAKEKTNEGTVVAVGTGRILNNGERVEIGVSVGDRVVYEPFGGTEVKTGDESYIVLKEEDIIAIVE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CHRSD (10 kDa chaperonin OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELE-LNGANHLILREDDVVGILE 525
            I+PL DRV+V+    E+KT GGI LP  AQ KP  GEV+AVG G+ +   ++  + VK G  VI+    G E + ++G   LI+ E D++ + E
Sbjct:    3 IRPLHDRVVVRRVEEEQKTAGGIVLPGNAQEKPTRGEVLAVGNGRILESGEVRPLDVKVGDTVIFKDGFGVEKQKIDGEEVLIMSESDILAVAE 96          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CAMJD (10 kDa chaperonin OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=groS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            + +PLG RVLVK     + T  GI +P  A+ KP  GEVVAV +  T         +  G +++++KY GTE++L+   +L+L  DD++GIL+
Sbjct:    2 NFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVSKEIT--------DIANGDKIMFAKYGGTEIKLDNNEYLVLNLDDILGILK 86          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_VIBHB (10 kDa chaperonin OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=groS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELE-LNGANHLILREDDVVGILE 525
            +I+PL DRV+V+ K VE K+ GGI L  +A  K   G V+AVG+G+ +   T L + VK G  VI+++  GT+ E ++G   L++ E+D++ I+E
Sbjct:    2 NIRPLHDRVIVERKEVESKSAGGIVLTGSAAEKSTRGVVLAVGKGRILENGTVLPLDVKVGDTVIFAEGYGTKTEKIDGKEVLVMSENDIMAIVE 96          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_NEOSM (10 kDa chaperonin OS=Neorickettsia sennetsu (strain Miyayama) GN=groS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTD-GGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +K L D+VL  I+  EEK   GGI++P +A+ KP  G VVAVG G K    T   + VK G  V+Y K+AG+E+E +G  +++++E D++ I E
Sbjct:    5 LKMLHDQVL--IRPHEEKDGAGGIYIPDSAKKKPTMGLVVAVGAGAKNSNGTFQPVCVKEGDIVLYRKWAGSEVEHDGVEYVVMKETDIIAIKE 96          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_EHRSE (10 kDa chaperonin OS=Ehrlichia sennetsu GN=groS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTD-GGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +K L D+VL  I+  EEK   GGI++P +A+ KP  G VVAVG G K    T   + VK G  V+Y K+AG+E+E +G  +++++E D++ I E
Sbjct:    5 LKMLHDQVL--IRPHEEKDGAGGIYIPDSAKKKPTMGLVVAVGAGAKNSNGTFQPVCVKEGDIVLYRKWAGSEVEHDGVEYVVMKETDIIAIKE 96          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_CAMJ82.951e-1138.7110 kDa chaperonin OS=Campylobacter jejuni subsp. j... [more]
CH10_STAS13.854e-1134.0410 kDa chaperonin OS=Staphylococcus saprophyticus ... [more]
CH10_PSEPF3.854e-1135.1110 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH10_CAMC13.854e-1138.7110 kDa chaperonin OS=Campylobacter concisus (strai... [more]
CH10_MACCJ5.033e-1134.4110 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH10_CHRSD5.033e-1141.4910 kDa chaperonin OS=Chromohalobacter salexigens (... [more]
CH10_CAMJD5.033e-1138.7110 kDa chaperonin OS=Campylobacter jejuni subsp. d... [more]
CH10_VIBHB6.573e-1141.0510 kDa chaperonin OS=Vibrio harveyi (strain ATCC B... [more]
CH10_NEOSM6.573e-1142.5510 kDa chaperonin OS=Neorickettsia sennetsu (strai... [more]
CH10_EHRSE6.573e-1142.5510 kDa chaperonin OS=Ehrlichia sennetsu GN=groS PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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