CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CYAP4 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 47/94 (50.00%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ GE+VAVG GK     ++ +  VK G +V+YSKYAGT+++L    +++L E D++ I+
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQVGEIVAVGPGKRNDDGSRQEPEVKIGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAIV 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLOPS (10 kDa chaperonin OS=Clostridium perfringens (strain SM101 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ  EVVAVG G  +   + ++ VK G +V+YSKYAGTE++  G  + ILR+DD++ I+E
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIIDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_PROA2 (10 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++KPL DRV+VK    EEKT GG+++P T + KPQ GE+VAVG GK     + L++ V  G +V+Y KY+GTE+ + G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEIVAVGTGKVAENGQVLEMQVNIGQKVLYGKYSGTEVTVEGEDYLIMRESDIFAILD 95          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLOTH (10 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groS PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +I+PLGDRV+VK+   EE T  GI LP +A+ KPQ  EVVAVG G  V   ++ + VK G +VI SKYAGTE++ +G  + ILR++D++ ++E
Sbjct:    2 NIRPLGDRVVVKMVETEETTKSGIVLPGSAKEKPQVAEVVAVGPGTVVDGKEVKMEVKVGDKVIISKYAGTEVKFDGQEYTILRQNDILAVVE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CLOBO (10 kDa chaperonin OS=Clostridium botulinum GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ  E+VAVG G  V   ++++ VK G +V++S+YAG E++++G  ++ILR++D++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVNMEVKVGDRVLFSQYAGNEVKIDGEEYIILRQNDILAIVE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVV 513
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK     T   + VK G +V+YSKYAGT+++L G ++++L E D++
Sbjct:    9 STVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_PROVI (10 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            ++KPL DRV+VK    EEKT GG+++P T + KP  GEVVAVG GK     + L++ VK G +V+Y KY+GTE+ + G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLEMPVKAGDKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_OCEIH (10 kDa chaperonin OS=Oceanobacillus iheyensis GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            IKPLGDRV++++   EE T  GI LP +A+ KPQ G+VVAVG G+     K+ + V  G ++I+SK+AGTE++  G  +LILRE+D++ I+
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRVENGEKIALEVSEGDRIIFSKFAGTEVKYEGTEYLILRENDILAII 92          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 43/94 (45.74%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  244 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +++KPL DRV VK+   EEKT GG++LP TA+ KPQ GEVVA+G GK     ++ ++ +K G +V+YSKYAGT+++L    +++L E D++ ++
Sbjct:    9 STVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAVV 102          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_GEOLS (10 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            ++PL DR++VK    EEKT GG+F+P TA+ KPQ GEV+AVG GK   + K   + VK G  +++ KYAGTE++++G   L++REDDV+ ++E
Sbjct:    3 LRPLHDRIIVKRLEGEEKTAGGLFIPDTAKEKPQKGEVIAVGNGKKNDEGKCAPLDVKVGDSILFGKYAGTEVKVDGDEFLMMREDDVLAVIE 95          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_CYAP42.254e-1950.0010 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_CLOPS2.254e-1949.4610 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_PROA22.944e-1947.8710 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH10_CLOTH2.944e-1949.4610 kDa chaperonin OS=Clostridium thermocellum (str... [more]
CH10_CLOBO2.944e-1947.8310 kDa chaperonin OS=Clostridium botulinum GN=groS... [more]
CH10_SYNY33.845e-1951.6510 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_PROVI3.845e-1949.4610 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH10_OCEIH3.845e-1948.3510 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH10_NOSP73.845e-1945.7410 kDa chaperonin OS=Nostoc punctiforme (strain AT... [more]
CH10_GEOLS3.845e-1948.3910 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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