CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CHLT3 (10 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            ++KPL DRV+VK    EEKT GG+++P + + KPQ GEVVAVG GK     T + + V+ G +V+Y KY+GTE+ ++G ++LI+RE D+  I+
Sbjct:    2 NLKPLADRVIVKPSPAEEKTKGGLYIPDSGKEKPQHGEVVAVGPGKAADNGTVVAMEVQVGQKVLYGKYSGTEVTVDGEDYLIMRESDIFAII 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACSK (10 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDR++++    EEKT  GI LP +A+ KPQ G+VVAVG G+ T    K+ + VK G  +I+SKYAGTE++  G  +LILRE DV+ I+
Sbjct:    2 LKPLGDRIIIEQIQSEEKTASGIVLPDSAKEKPQEGKVVAVGTGRVTDNGEKVALEVKEGDSIIFSKYAGTEVKYEGTEYLILRESDVLAII 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_ALKMQ (10 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGILE 525
            +IKPLGD+V++K    E+KT  GI LP +A+ +PQ  EVVAVG G  V   ++ + +K G +VI+SKYAGTE++L+G  + ILR++D++ ++E
Sbjct:    2 NIKPLGDKVVIKKVEAEDKTKSGIVLPGSAKEQPQMAEVVAVGPGGVVEGKEIIMELKVGDKVIFSKYAGTEVKLDGEEYTILRQNDILAVVE 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_LACAC (10 kDa chaperonin OS=Lactobacillus acidophilus GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGI 519
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG  T    KL + VK G  V+Y KY+GT +E  G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKEEEEKTVGGIVLASNAKQKPTEGEVVAVGEGAYTSNGDKLPMVVKKGDVVLYDKYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACWK (10 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ I+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPETAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAII 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACST (10 kDa chaperonin OS=Bacillus stearothermophilus GN=groS PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 44/92 (47.83%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G VVAVG+G+ +    ++   V+ G ++I+SKYAGTE++ +G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIEVIETEEKTASGIVLPDTAKEKPQEGRVVAVGKGRVLDSGERVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACLD (10 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G+VVA G G+ +    ++ + VK G ++I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKVVAAGSGRVLESGERVALEVKTGDRIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACCR (10 kDa chaperonin OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=groS PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+VVAVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACC4 (10 kDa chaperonin OS=Bacillus cereus (strain B4264) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+VVAVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACC2 (10 kDa chaperonin OS=Bacillus cereus (strain G9842) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+VVAVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVVAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_CHLT31.119e-1847.3110 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH10_BACSK1.119e-1851.0910 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH10_ALKMQ1.119e-1847.3110 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH10_LACAC1.461e-1852.7510 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH10_BACWK1.461e-1847.8310 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH10_BACST1.461e-1847.8310 kDa chaperonin OS=Bacillus stearothermophilus G... [more]
CH10_BACLD1.461e-1846.7410 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH10_BACCR1.461e-1847.8310 kDa chaperonin OS=Bacillus cereus (strain ATCC ... [more]
CH10_BACC41.461e-1847.8310 kDa chaperonin OS=Bacillus cereus (strain B4264... [more]
CH10_BACC21.461e-1847.8310 kDa chaperonin OS=Bacillus cereus (strain G9842... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
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