CN189017

Overview
NameCN189017
Unique NameCN189017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_CHLTE (10 kDa chaperonin OS=Chlorobium tepidum GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  247 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            ++KPL DRV+VK    EEKT GG+++P T + KP  GEVVAVG GK     + + + VK G +V+Y KY+GTE+ + G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGPGKVSDAGQVVAMQVKAGDKVLYGKYSGTEVHVEGEDYLIMRESDIFAIL 94          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACP3 (10 kDa chaperonin OS=Bacillus PS3 GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G VVAVG G+ +    ++    K G +VI+SKYAGTE++ +G  +LILRE D++ ++
Sbjct:    2 LKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGAGRVLDNGQRIGRKSKVGDRVIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACHK (10 kDa chaperonin OS=Bacillus thuringiensis subsp. konkukian GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACCZ (10 kDa chaperonin OS=Bacillus cereus (strain ZK / E33L) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACCQ (10 kDa chaperonin OS=Bacillus cereus (strain Q1) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACC7 (10 kDa chaperonin OS=Bacillus cereus (strain AH187) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACC3 (10 kDa chaperonin OS=Bacillus cereus (strain 03BB102) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACC1 (10 kDa chaperonin OS=Bacillus cereus (strain ATCC 10987) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACC0 (10 kDa chaperonin OS=Bacillus cereus (strain AH820) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CN189017 vs. ExPASy Swiss-Prot
Match: CH10_BACAN (10 kDa chaperonin OS=Bacillus anthracis GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  250 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELELNGANHLILREDDVVGIL 522
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE++  G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
The following BLAST results are available for this feature:
BLAST of CN189017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_CHLTE1.908e-1848.3910 kDa chaperonin OS=Chlorobium tepidum GN=groS PE... [more]
CH10_BACP31.908e-1847.8310 kDa chaperonin OS=Bacillus PS3 GN=groS PE=3 SV=... [more]
CH10_BACHK1.908e-1846.7410 kDa chaperonin OS=Bacillus thuringiensis subsp.... [more]
CH10_BACCZ1.908e-1846.7410 kDa chaperonin OS=Bacillus cereus (strain ZK / ... [more]
CH10_BACCQ1.908e-1846.7410 kDa chaperonin OS=Bacillus cereus (strain Q1) G... [more]
CH10_BACC71.908e-1846.7410 kDa chaperonin OS=Bacillus cereus (strain AH187... [more]
CH10_BACC31.908e-1846.7410 kDa chaperonin OS=Bacillus cereus (strain 03BB1... [more]
CH10_BACC11.908e-1846.7410 kDa chaperonin OS=Bacillus cereus (strain ATCC ... [more]
CH10_BACC01.908e-1846.7410 kDa chaperonin OS=Bacillus cereus (strain AH820... [more]
CH10_BACAN1.908e-1846.7410 kDa chaperonin OS=Bacillus anthracis GN=groS PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001D01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189017 ID=CN189017; Name=CN189017; organism=Citrus sinensis; type=EST; length=617bp
ACTACTCGCTCGCTTCTCGCTTACATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGACTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTAAATGGCGCAAATCATCTCATATTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAAGAGACAACT
GCTGGAAGTTTGTTGTT
back to top