CN188996

Overview
NameCN188996
Unique NameCN188996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_YEAST (V-type proton ATPase subunit E OS=Saccharomyces cerevisiae GN=VMA4 PE=1 SV=4)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 74/229 (32.31%), Postives = 126/229 (55.02%), Query Frame = 3
Query:   27 INNLIKSKDPAKMNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            +++ I +  P ++ND     ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L EP  +++  + D  L+ES+ +    EY +K Q  P E IV    YL              SGGVVV++   KI   NTL+ RL ++  + L
Sbjct:    1 MSSAITALTPNQVND-----ELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDL---------VSGGVVVSNASDKIEINNTLEERLKLLSEEAL 215          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_CANAL (V-type proton ATPase subunit E OS=Candida albicans GN=VMA4 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.140e-27
Identity = 66/217 (30.41%), Postives = 121/217 (55.76%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            ++D  V  ++ +M  FI +EA+EKA EI + A+EE+ IEK  +V +E   I   YE+K K+  + ++I  S   N +R+++L  +D+++  + + A  E+  +++D   YK +L GLI + +L L EP V ++ R+ D  + +  +  A + + +K +    EI +D + +L              +GG+VV +  GKI  +NTL+ RL ++  + L
Sbjct:    3 LSDEQVKSELSKMQAFIEKEAKEKAKEIKLKADEEYEIEKASIVRSETAAIDSTYEQKLKKASLAQQITKSTIGNKTRLRILSTKDEVLHEIFDEAEAELKKITKDKKQYKPVLVGLIEEGVLALMEPKVSIKVREQDVDVAKEAITEAAKNFEEKAK-FKVEISIDDKNFL----------AKDIAGGIVVVNGSGKIEVDNTLEERLKILSEEAL 208          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_NEUCR (V-type proton ATPase subunit E OS=Neurospora crassa GN=vma-4 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.559e-26
Identity = 67/212 (31.60%), Postives = 113/212 (53.30%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVV 698
            ++D  V +++++M  FI+QEAEEKA EI + A+EEF IEK +LV  E   I   Y +K KQ ++ ++I  S   N +R++VL A+ +L+  + EAAS ++   + D   YK +L+ LI++    + EP +++R R+ D+  V      A  +Y  K        I                     +GG+++   +GKI  +NT +ARL ++
Sbjct:    7 LSDDQVGQELRKMTAFIKQEAEEKAREIQIKADEEFAIEKSKLVRQETDAIDSAYAKKFKQAQMSQQITRSTMANKTRLRVLGARQELLDEIFEAASAQLGQATHDLGRYKDILRDLILEGFYAMNEPELVIRARQADYDAVREAAGWASAQYKHKTDKDVKATI-----------DAENPVPEGSAGGIIIVGGNGKIDIDNTFEARLTLL 207          
BLAST of CN188996 vs. ExPASy Swiss-Prot
Match: VATE_SCHPO (V-type proton ATPase subunit E OS=Schizosaccharomyces pombe GN=vma4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 68/217 (31.34%), Postives = 116/217 (53.46%), Query Frame = 3
Query:   63 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 713
            ++D  V  ++ +MV FI+QEA EKA EI   +EEEF +EK ++V  +   I Q Y+ K K+  + +KI  S  LN SR+++L ++  ++ ++     K++  + +  ++Y K +  LIVQ++  L EP  ++  R+ D  +V++ +  A E    K      E+  +   +L            S  GGVV+    GKI  +NTL ARL++V  + L
Sbjct:    3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFL----------NDSVLGGVVLVGLGGKIRVDNTLRARLEIVKEEAL 209          
The following BLAST results are available for this feature:
BLAST of CN188996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_YEAST2.405e-2732.31V-type proton ATPase subunit E OS=Saccharomyces ce... [more]
VATE_CANAL9.140e-2730.41V-type proton ATPase subunit E OS=Candida albicans... [more]
VATE_NEUCR1.559e-2631.60V-type proton ATPase subunit E OS=Neurospora crass... [more]
VATE_SCHPO9.458e-2431.34V-type proton ATPase subunit E OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188996 ID=CN188996; Name=CN188996; organism=Citrus sinensis; type=EST; length=739bp
GAGGGAATCGCTCTTCTCATTTTGATATCAACAATCTAATCAAATCAAAA
GATCCCGCGAAAATGAACGACGCTGATGTTTCGAAGCAGATCCAGCAGAT
GGTGCGGTTTATCCGCCAAGAAGCCGAAGAGAAAGCCAACGAGATCTCAG
TTTCTGCCGAAGAAGAATTCAACATAGAGAAGTTGCAGCTGGTGGAAGCA
GAGAAGAAGAAGATCAGACAAGAGTACGAGCGGAAAGAGAAGCAAGTCGA
AATCAGAAAGAAGATTGAGTACTCCATGCAGCTGAATGCTTCTCGGATCA
AAGTTCTTCAAGCTCAGGATGATTTGGTCAGTAATATGATGGAGGCAGCA
TCAAAGGAGGTTTTGAATGTGAGTCGAGATCACAATTCATATAAGAAGCT
TTTGAAGGGTCTTATTGTTCAGAGTTTGCTCAGGCTGAAAGAGCCAGCTG
TGTTACTGAGATGCCGCAAAGATGACCATCATTTGGTGGAGTCTGTTTTG
GAGTCAGCAAAAGAGGAATATGCACAGAAATTGCAGGTTCACCCACCAGA
GATAATTGTGGATCATCAAATCTATCTTCCGCCTGGCCCTGGCCATCATA
ATGCCCATGGTCCATCCTGCTCAGGAGGTGTCGTGGTGGCTTCTCGAGAT
GGGAAGATAGTATGTGAGAATACCCTTGATGCACGGTTGGATGTTGTGTT
CCGTAAAAAACTTTCCTGAGATCCGGAAGCACCTCGTCA
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