CN188995

Overview
NameCN188995
Unique NameCN188995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_YEAST (V-type proton ATPase subunit E OS=Saccharomyces cerevisiae GN=VMA4 PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 57/182 (31.32%), Postives = 96/182 (52.75%), Query Frame = -3
Query:  162 LVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 707
            +V  E   I   ++ K K+  + ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L EP  +++  + D  L+ES+ +    EY +K Q  P E IV    YL              SGGVVV++   KI   NTL+ RL ++  + LP IR +L
Sbjct:   50 IVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDL---------VSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLEL 222          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_CANAL (V-type proton ATPase subunit E OS=Candida albicans GN=VMA4 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 52/182 (28.57%), Postives = 98/182 (53.85%), Query Frame = -3
Query:  162 LVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 707
            +V +E   I   YE+K K+  + ++I  S   N +R+++L  +D+++  + + A  E+  +++D   YK +L GLI + +L L EP V ++ R+ D  + +  +  A + + +K +    EI +D + +L              +GG+VV +  GKI  +NTL+ RL ++  + LP IR +L
Sbjct:   45 IVRSETAAIDSTYEQKLKKASLAQQITKSTIGNKTRLRILSTKDEVLHEIFDEAEAELKKITKDKKQYKPVLVGLIEEGVLALMEPKVSIKVREQDVDVAKEAITEAAKNFEEKAK-FKVEISIDDKNFL----------AKDIAGGIVVVNGSGKIEVDNTLEERLKILSEEALPAIRLEL 215          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_NEUCR (V-type proton ATPase subunit E OS=Neurospora crassa GN=vma-4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 51/186 (27.42%), Postives = 89/186 (47.85%), Query Frame = -3
Query:  153 QLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 710
            +LV  E   I   Y +K KQ ++ ++I  S   N +R++VL A+ +L+  + EAAS ++   + D   YK +L+ LI++    + EP +++R R+ D+  V      A  +Y  K        I                     +GG+++   +GKI  +NT +ARL ++    LP +RK L  +
Sbjct:   48 KLVRQETDAIDSAYAKKFKQAQMSQQITRSTMANKTRLRVLGARQELLDEIFEAASAQLGQATHDLGRYKDILRDLILEGFYAMNEPELVIRARQADYDAVREAAGWASAQYKHKTDKDVKATI-----------DAENPVPEGSAGGIIIVGGNGKIDIDNTFEARLTLLKDSALPAMRKALFGE 222          
BLAST of CN188995 vs. ExPASy Swiss-Prot
Match: VATE_SCHPO (V-type proton ATPase subunit E OS=Schizosaccharomyces pombe GN=vma4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 53/186 (28.49%), Postives = 95/186 (51.08%), Query Frame = -3
Query:  153 QLVEAEKKKISQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 710
            ++V  +   I Q Y+ K K+  + +KI  S  LN SR+++L ++  ++ ++     K++  + +  ++Y K +  LIVQ++  L EP  ++  R+ D  +V++ +  A E    K      E+  +   +L            S  GGVV+    GKI  +NTL ARL++V  + LPEIR+ L  +
Sbjct:   44 KIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFL----------NDSVLGGVVLVGLGGKIRVDNTLRARLEIVKEEALPEIRRLLFGE 219          
The following BLAST results are available for this feature:
BLAST of CN188995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_YEAST1.123e-1831.32V-type proton ATPase subunit E OS=Saccharomyces ce... [more]
VATE_CANAL4.269e-1828.57V-type proton ATPase subunit E OS=Candida albicans... [more]
VATE_NEUCR3.995e-1627.42V-type proton ATPase subunit E OS=Neurospora crass... [more]
VATE_SCHPO1.983e-1528.49V-type proton ATPase subunit E OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188995 ID=CN188995; Name=CN188995; organism=Citrus sinensis; type=EST; length=715bp
TTTTTTTTTTTTTATTCTGCAACATTATAATTTAAAATATGCAAACAAAC
ACTACATAATAAATTTTTATGGTCAATAACTAAACTTAAAAACTTCGGAC
ATGAATAATCAGAGGGTGACAATCAATTCAAATTAACTCATCATGCAGCA
ACCTGACTGACGAGCTGCTTCCGGATCTCAGGAAGTTTTTTACGGAACAC
AACATCCAACCGTGCATCAAGGGTATTCTCACATACTATCTTCCCATCTC
GAGAAGCCACCACGACACCTCCTGAGCAGGATGGACCATGGGCATTATGA
TGGCCAGGGCCAGGCGGAAGATAGATTTGATGATCCACAATTATCTCTGG
TGGGTGAACCTGCAATTTCTGTGCATATTCCTCTTTTGCTGACTCCAAAA
CAGACTCCACCAAATGATGGTCATCTTTGCGGCATCTCAGTAACACAGCT
GGCTCTTTCAGCCTGAGCAAACTCTGAACAATAAGACCCTTCAAAAGCTT
CTTATATGAATTGTGATCTCGACTCACATTCAAAACCTCCTTTGATGCTG
CCTCCATCATATTACTGACCAAATCATCCTGAGCTTGAAGAACTTTGATC
CGAGAAGCATTCAGCTGCATGGAGTACTCAATCTTCTTTCTGATTTCAAC
TTGCTTCTCTTTCCGCTCGTACTCTTGACTGATCTTCTTCTTCTCTGCTT
CCACCAACTGCAACT
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