CN188981

Overview
NameCN188981
Unique NameCN188981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP343_HUMAN (Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 50/145 (34.48%), Postives = 86/145 (59.31%), Query Frame = -3
Query:  268 HQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 699
            H D Q++ ++E+  V  N  P  YD L  ++ + M++ E LRL+P V+ ++R   K+ ++  + +P G+ + +P+  +H DP+ W  +  +F PERF++  +K + +   Y PF  GPR C+G  FAL   K+A    LQN+SF+
Sbjct:  324 HPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVVNETLRLFPVVSRVTRVCKKDIEINGVFIPKGLAVMVPIYALHHDPKYW-TEPEKFCPERFSKK-NKDSIDLYRYIPFGAGPRNCIGMRFALTNIKLAVIRALQNFSFK 466          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP4D1_DROSI (Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4d1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 53/162 (32.72%), Postives = 86/162 (53.09%), Query Frame = -3
Query:  223 HQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTL 699
            H + Q++  +E+  V GN+K     Y+ LN L  V + + E LR+YP V +L R VL++ ++    +PAG  IG+  + + +  EL+ +    FKPERF    +    N  +Y PF+ GPR C+GQ FA++E K     +L++Y  +        P  +  L
Sbjct:  335 HPEAQKKCFEEIRSVVGNDKSTPVSYELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPN-SFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYEVDFVGDSSEPPVLIAEL 495          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP4D1_DROME (Cytochrome P450 4d1 OS=Drosophila melanogaster GN=Cyp4d1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 53/162 (32.72%), Postives = 86/162 (53.09%), Query Frame = -3
Query:  223 HQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTL 699
            H + Q++  +E+  V GN+K     Y+ LN L  V + + E LR+YP V +L R VL++ ++    +PAG  IG+  + + +  EL+ +    FKPERF    +    N  +Y PF+ GPR C+GQ FA++E K     +L++Y  +        P  +  L
Sbjct:  335 HPEAQKKCFEEIRSVVGNDKSTPVSYELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPN-SFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYEVDFVGDSSEPPVLIAEL 495          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP3AH_CAVPO (Cytochrome P450 3A17 OS=Cavia porcellus GN=CYP3A17 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 56/171 (32.75%), Postives = 93/171 (54.39%), Query Frame = -3
Query:  190 HQDWQERARQEVLQVFGNNK-PDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILR 699
            H D Q++ +QE+ +   N   P YD +  ++ + M++ E LRLYP    + R   K+ ++  ++ P G  + +P   +H+D + W  +  EF+PERF++  +K   +   Y PF  GPR C+G   AL+  K+A   +LQN+SF     Y    T +P     LG+Q+IL+
Sbjct:  324 HPDVQKKLQQEIDKTLPNKAFPTYDVMMEMEYLDMVVNETLRLYPVTNRIERMSKKDFEINGMSFPKGTGVMIPSFALHRDSKYW-PEPDEFRPERFSKK-NKENIDPYIYMPFGNGPRNCIGMRMALMNLKLALIRLLQNFSF-----YTCKETQIPL---RLGSQVILQ 484          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP3AA_MESAU (Lithocholate 6-beta-hydroxylase OS=Mesocricetus auratus GN=CYP3A10 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = -3
Query:  268 HQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 699
            H D Q++   E+     N  P  YD L  ++ + M++ E LRLYP    L R   K  ++  L +P G+ + +P   +H+DPE W  +  EF+PERF++  +K + +   Y PF  GPR C+G  FAL+  K+A   +LQN++ +
Sbjct:  324 HPDVQKKLHDEIDSALPNKAPVTYDVLMGMEYLDMVINEGLRLYPIANRLERISKKAVEINGLFIPKGITVMVPTYPLHRDPEYW-PEPEEFRPERFSKE-NKGSIDPYVYMPFGNGPRNCIGMRFALLSMKLAVVSVLQNFTLQ 466          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 53/145 (36.55%), Postives = 82/145 (56.55%), Query Frame = -3
Query:  268 HQDWQERARQEVLQVFGNNKPD-YDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 699
            H D Q++ ++E+     +  P  YD +  ++ + M+L E LRLYP    L R   K+ +L  L +P G  + +P   +H DP+ W     EF PERF++  +K + +   Y PF  GPR C+G  FAL+  K+A T +LQN+SF+
Sbjct:  325 HPDIQKKLQEEIDGALPSKAPPTYDIVMEMEYLDMVLNETLRLYPIGNRLERVCKKDIELDGLFIPKGSVVTIPTYALHHDPQHW-PKPEEFHPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQ 467          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP4AO_PIG (Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 63/178 (35.39%), Postives = 99/178 (55.62%), Query Frame = -3
Query:  184 SKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKE-TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVP--TLHPELGTQLILRKL 705
            + H + Q+R R+E+  + G+     +D L+ +    M + E LRLYPPV  +SR + K  T     +LPAG+ + L +  +H +P++W +   EF P RFA G   +A++  ++ PF+ G R C+G+ FA+ E K+A  + L    FEL+P     P A P   L+ + G  L LRKL
Sbjct:  332 ASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPGVSRELSKPITFPDGRSLPAGITLSLSIYGLHHNPQVWPNPE-EFDPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTL--LRFELAPDPSRKPIATPEVVLNSKNGIHLKLRKL 503          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 52/148 (35.14%), Postives = 84/148 (56.76%), Query Frame = -3
Query:  268 HQDWQERARQEVLQVFGNNKPD-YDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVS---YFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 699
            H D Q++ ++E+  V  N  P  YD +  ++ + M++ E LRL+P    L R   K+ ++  + +P GV + +P   +H+DP+ W  +  +F PERF    SK  K+ +    Y PF  GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  324 HPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYW-TEPEKFLPERF----SKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: C13B1_CAEEL (Putative cytochrome P450 cyp-13B1 OS=Caenorhabditis elegans GN=cyp-13B1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 52/144 (36.11%), Postives = 84/144 (58.33%), Query Frame = -3
Query:  277 SKHQDWQERARQEVLQVFGNNKPDYDGLNHLKIVQMILYEVLRLYPPVTML-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNY 705
            +KH +  + A++EV  V G+    YD +  LK +  ++ E LRLYP      SR  +K T LG++ +  GV+I   ++ +H+  E+WG++A +F PER+ E    ++++ +S+ PF  GPR CVG    L EAK A   +L+ Y
Sbjct:  337 AKHPEKMKLAQEEVDTVVGSENVSYDDMTKLKYLDAVVRESLRLYPVAWFACSRECVKPTTLGDIYIDKGVKIEADVMSLHRSKEIWGENADDFVPERWLE---PSSRHTMSWIPFGAGPRQCVGMRLGLSEAKTALAHLLRRY 477          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP3AL_CALJA (Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3A21 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = -3
Query:  268 HQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 699
            H D Q++ ++E+  V  N  P  YD +  ++ + M++ E LRL+P    L R   K+ ++  + +P GV + +P   +H DP+ W  +  +F PERF++  +K   +   Y PF  GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  324 HPDVQQKLQEEIDAVLPNKAPATYDTVLQMEYLDMVVNETLRLFPLAMRLERVCKKDVEINGVFIPKGVVVMIPSYALHYDPKYW-TEPEKFLPERFSKN-NKDNIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
The following BLAST results are available for this feature:
BLAST of CN188981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
CP343_HUMAN1.561e-2034.48Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE... [more]
CP4D1_DROSI4.543e-2032.72Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4... [more]
CP4D1_DROME4.543e-2032.72Cytochrome P450 4d1 OS=Drosophila melanogaster GN=... [more]
CP3AH_CAVPO4.543e-2032.75Cytochrome P450 3A17 OS=Cavia porcellus GN=CYP3A17... [more]
CP3AA_MESAU4.543e-2035.17Lithocholate 6-beta-hydroxylase OS=Mesocricetus au... [more]
CP3A2_RAT4.543e-2036.55Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP4AO_PIG5.933e-2035.39Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2... [more]
CP3A4_HUMAN5.933e-2035.14Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
C13B1_CAEEL7.749e-2036.11Putative cytochrome P450 cyp-13B1 OS=Caenorhabditi... [more]
CP3AL_CALJA1.012e-1934.48Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188981 ID=CN188981; Name=CN188981; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTGCACCAAATATTGTACAATATTATTATAATACA
GTACTAATGCAATACAGTATAATACAATACAATGTGCCAAACGCACCCTA
AATACATTAAACTTCATTATAAAAAAGTCTACATTGGCATCATGCTCATC
TTATAGTTGCCGGTATTAATTATTTTTGCACCATAGTTTCCGTAGAATCA
ATTGGGTACCCAGTTCCGGATGAAGGGTTGGAACCGCCGTTGGAGCATGG
ACATAGGATGGAGACAACTCGAATGAGTAGTTTTGAAGAATCATTGTCGT
GGCCATTTTTGCTTCTACTAGAGCAAAATTTTGTCCAACACATATCCTAG
GACCCAATGCGAATGGGAAATATGAAACTTGATTTTTCGCCGCCTTTGAA
ATTCCTTCCGCAAACCTTTCCGGCTTAAACTCAACTGCATCGTCACCCCA
AAGTTCAGGATCCTGGTGAACTAGGATCATTGGCAAGCCAATTTGAACCC
CAGCGGGTAATGTCAAGTTTCCGAGTTTCGTTTCCTTAAGAACAGCTCGA
CTAAGCATAGTTACGGGCGGATAAAGCCTGAGTACCTCATAAAGTATCAT
CTGGACAATTTTGAGGTGATTCAATCCATCATAGTCGGGCTTATTATTGC
CAAACACTTGCAAAACCTCTTGCCTTGCACGTTCTTGCCAATCTTGATGC
TTGCTCA
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