CN188981

Overview
NameCN188981
Unique NameCN188981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 55/176 (31.25%), Postives = 93/176 (52.84%), Query Frame = -3
Query:  184 SKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKE-TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 705
            + + + Q+R R+E+  + G+     +D L+ +    M + E LRLYPPV  + R + K  T     +LPAG+ + L +  +H +P++W +   EF P RFA G   +A++  ++ PF+ G R C+G+ FA+ E K+   + L  +     PS +  P     L  + G  L LRK+
Sbjct:  332 ASNPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWPNPE-EFDPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAMNEMKVVVALTLLRFELAPDPSRIPVPIQGIVLKSKNGIHLNLRKI 503          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: C13A8_CAEEL (Putative cytochrome P450 CYP13A8 OS=Caenorhabditis elegans GN=cyp-13A8 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 49/141 (34.75%), Postives = 80/141 (56.74%), Query Frame = -3
Query:  268 QERARQEVLQVFGNNKPDYDGLNHLKIVQMILYEVLRLYPPVTML-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 687
            Q + + EV +   N++  +D L+ LK +  ++ E LRL+P  +   SR  ++ T +G   + AGV + +    +H D  +WG+D  EFKPER+   ++     Q +Y  F  GPR+C+G  FAL+E K   + IL+ Y+FE
Sbjct:  343 QSKLQDEVDKECPNDEITFDQLSKLKYMDNVIKESLRLFPFASFANSRRCMRNTVIGEQIVEAGVDVMIDTWTLHHDKNVWGNDVEEFKPERWDSPLTP----QQAYLSFGAGPRVCLGMRFALLEQKGLLSHILKKYTFE 479          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: C4G15_DROME (Cytochrome P450 4g15 OS=Drosophila melanogaster GN=Cyp4g15 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 46/145 (31.72%), Postives = 89/145 (61.38%), Query Frame = -3
Query:  277 HQDWQERARQEVLQVFGNNK--PDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL--GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNY 699
            HQD Q+R   E+  +FG+++    +     +K ++  L E LR+YPPV +++R + ++ KL  GN  +P G  + +  +L+H++P+++ +  V F P+ F     +A ++  ++ PF+ GPR CVG+ +A+++ K+  + IL+NY
Sbjct:  398 HQDIQDRVLAELDSIFGDSQRPATFQDTLEMKYLERCLMETLRMYPPVPLIARELQEDLKLNSGNYVIPRGATVTVATVLLHRNPKVYANPNV-FDPDNFLPE-RQANRHYYAFVPFSAGPRSCVGRKYAMLKLKILLSTILRNY 540          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP4FE_MOUSE (Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus GN=Cyp4f14 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 51/148 (34.46%), Postives = 87/148 (58.78%), Query Frame = -3
Query:  277 SKHQDWQERARQEVLQVFGNNKPD---YDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERF-AEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNY 705
            ++H ++QER RQEV ++    +P+   +D L  L  + M + E LRL+PPVT++SR   ++  L +  T+P G+   + +  +H +P +W D  V + P RF  E I  ++   +++ PF+ GPR C+GQ FA+ E K+A  + L  +
Sbjct:  345 ARHPEYQERCRQEVQELLRGREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDILLPDGRTIPKGIICLISIFGIHHNPSVWPDPEV-YDPFRFDPENIKDSSP--LAFIPFSAGPRNCIGQTFAMSEMKVALALTLLRF 489          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP4FC_HUMAN (Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 50/149 (33.56%), Postives = 86/149 (57.72%), Query Frame = -3
Query:  271 SKHQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSF 705
            ++H ++QER RQEV ++  +  P   ++D L  L  + M + E LRL+PP   +SR   ++  L +   +P G+   + +I VH +P +W D  V + P RF    SK  ++ +++ PF+ GPR C+GQ FA+ E K+   ++L ++ F
Sbjct:  345 ARHPEYQERCRQEVQELLKDRDPKEIEWDDLAQLPFLTMCVKESLRLHPPAPFISRCCTQDIVLPDGRVIPKGITCLIDIIGVHHNPTVWPDPEV-YDPFRFDPENSKG-RSPLAFIPFSAGPRNCIGQAFAMAEMKVVLALMLLHFRF 491          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: C4D21_DROME (Probable cytochrome P450 4d21 OS=Drosophila melanogaster GN=Cyp4d21 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 53/155 (34.19%), Postives = 88/155 (56.77%), Query Frame = -3
Query:  259 SKHQDWQERARQEVLQVFGNNKPDYDG------LNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSP 705
            S+H   QE   +E++ V G   PD D       L  LK +  ++ E +RL+PPV +L R + ++ K+G +T+P    I L    V++DPE + D  V FKPER+ +  + +    ++Y PF+ GP+ C+GQ FA ++ K   + ++++Y  EL P
Sbjct:  333 SRHPKVQECIYEELVSVLG---PDPDASVTQTKLLELKYLDCVIKETMRLHPPVPILGRYIPEDLKIGEITIPGNTSILLMPYYVYRDPEYFPDPLV-FKPERWMDMKTTSNTPPLAYIPFSSGPKNCIGQKFANLQMKALISKVIRHY--ELLP 481          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP4F3_RAT (Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus norvegicus GN=Cyp4f3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 50/147 (34.01%), Postives = 83/147 (56.46%), Query Frame = -3
Query:  277 SKHQDWQERARQEVLQVFGNNKPD---YDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNY 705
            +KH ++QER RQEV ++  + +P+   +D L  L  + M + E LRL+PP T +SR   ++  L +   +P GV   + +   H +P +W D  V + P RF     K  ++ +++ PF+ GPR C+GQ FA+ E K+A  + L  +
Sbjct:  345 AKHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPATAISRCCTQDIMLPDGRVIPKGVICRISIFGTHHNPAVWPDPEV-YNPFRFDADNGKG-RSPLAFIPFSAGPRNCIGQTFAMSEMKVALALTLLRF 489          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP4B1_MOUSE (Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 55/170 (32.35%), Postives = 88/170 (51.76%), Query Frame = -3
Query:  184 QERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKE-TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 687
            Q+R R+EV ++ G+     +D L  +  + M + E  RLYPPV  + R + K  T +   +LPAG  I L +  +H++  +W D  V F P RF+   +   ++  ++ PF+ GPR C+GQ FA+ E K+ T + L  + F   PS +        L  + G  L L+ L
Sbjct:  338 QQRCREEVREILGDRDSFQWDDLAQMTYLTMCMKECFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISLHIYALHRNSAVWPDPEV-FDPLRFSPE-NMTGRHPFAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRFEFSPDPSKIPIKVPQLILRSKNGIHLYLKPL 505          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: C97B2_SOYBN (Cytochrome P450 97B2 OS=Glycine max GN=CYP97B2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 63/201 (31.34%), Postives = 98/201 (48.76%), Query Frame = -3
Query:  175 ERARQEVLQVFGNNKPDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL--------GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFA-----------EGISKAAK------NQV----SYFPFALGPRICVGQNFALVEAKMATTMILQNYSFEL--SPSYVHAPTAVPTLHPELGTQLILRKLWCK 684
            ++A+ EV  V G  +P ++ L  L+ +++I+ E LRLYP   +L R  LK   L            +PAG  + + +  +H+ P  W D   +F+PERF             G+  +        N+V    ++ PF  GPR CVG  FAL+E+ +A TM+LQN+  EL  +P  V   T   T+H + G       +WC+
Sbjct:  377 KKAQAEVDLVLGTGRPTFESLKELQYIRLIVVEALRLYPQPPLLIRRSLKSDVLPGGHKGEKDGYAIPAGTDVFISVYNLHRSPYFW-DRPDDFEPERFLVQNKNEEIEGWAGLDPSRSPGALYPNEVISDFAFLPFGGGPRKCVGDQFALMESTVALTMLLQNFDVELKGTPESVELVTGA-TIHTKNG-------MWCR 568          
BLAST of CN188981 vs. ExPASy Swiss-Prot
Match: CP4AA_MOUSE (Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 57/174 (32.76%), Postives = 90/174 (51.72%), Query Frame = -3
Query:  184 HQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 699
            H D Q+R R+EV  + G+     +D L+ +    M + E LRLYPPV  + R +       +  +LP GVQ+ L +  +H +P++W +  V F P RFA     + ++  S+ PF+ G R C+G+ FA+ E K+   + L  +     P+ V  P A   L  + G  L L+KL
Sbjct:  339 HPDHQQRCREEVQSLLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSVTFPDGRSLPKGVQVTLSIYGLHHNPKVWPNPEV-FDPSRFAPD---SPRHSHSFLPFSGGARNCIGKQFAMSELKVIVALTLLRFELLPDPTRVPMPLARLVLKSKNGIYLHLKKL 508          
The following BLAST results are available for this feature:
BLAST of CN188981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
CP4AL_PIG9.472e-1831.25Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
C13A8_CAEEL9.472e-1834.75Putative cytochrome P450 CYP13A8 OS=Caenorhabditis... [more]
C4G15_DROME1.237e-1731.72Cytochrome P450 4g15 OS=Drosophila melanogaster GN... [more]
CP4FE_MOUSE1.616e-1734.46Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus... [more]
CP4FC_HUMAN1.616e-1733.56Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE... [more]
C4D21_DROME1.616e-1734.19Probable cytochrome P450 4d21 OS=Drosophila melano... [more]
CP4F3_RAT2.110e-1734.01Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus nor... [more]
CP4B1_MOUSE2.110e-1732.35Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1... [more]
C97B2_SOYBN2.110e-1731.34Cytochrome P450 97B2 OS=Glycine max GN=CYP97B2 PE=... [more]
CP4AA_MOUSE2.756e-1732.76Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188981 ID=CN188981; Name=CN188981; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTGCACCAAATATTGTACAATATTATTATAATACA
GTACTAATGCAATACAGTATAATACAATACAATGTGCCAAACGCACCCTA
AATACATTAAACTTCATTATAAAAAAGTCTACATTGGCATCATGCTCATC
TTATAGTTGCCGGTATTAATTATTTTTGCACCATAGTTTCCGTAGAATCA
ATTGGGTACCCAGTTCCGGATGAAGGGTTGGAACCGCCGTTGGAGCATGG
ACATAGGATGGAGACAACTCGAATGAGTAGTTTTGAAGAATCATTGTCGT
GGCCATTTTTGCTTCTACTAGAGCAAAATTTTGTCCAACACATATCCTAG
GACCCAATGCGAATGGGAAATATGAAACTTGATTTTTCGCCGCCTTTGAA
ATTCCTTCCGCAAACCTTTCCGGCTTAAACTCAACTGCATCGTCACCCCA
AAGTTCAGGATCCTGGTGAACTAGGATCATTGGCAAGCCAATTTGAACCC
CAGCGGGTAATGTCAAGTTTCCGAGTTTCGTTTCCTTAAGAACAGCTCGA
CTAAGCATAGTTACGGGCGGATAAAGCCTGAGTACCTCATAAAGTATCAT
CTGGACAATTTTGAGGTGATTCAATCCATCATAGTCGGGCTTATTATTGC
CAAACACTTGCAAAACCTCTTGCCTTGCACGTTCTTGCCAATCTTGATGC
TTGCTCA
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