CN188976

Overview
NameCN188976
Unique NameCN188976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.172e-38
Identity = 66/137 (48.18%), Postives = 91/137 (66.42%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L ++G   + ++     F+ G  CGAC+ I CV+DP+WC PG+I +TAT+FC          G WCNPPQ+HFDLS P   +IAQYKAG+VPV YRR+ C R GG++F   G+ YF ++L  NV GAGD++ + +KG
Sbjct:   81 LFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKG 215          

HSP 2 Score: 31.187 bits (69), Expect = 2.172e-38
Identity = 13/33 (39.39%), Postives = 16/33 (48.48%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W DA ATFY              YG+L+ +GYG
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYG 87          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.173e-38
Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGAC++I C  DP+WC PGS+ +TAT+FC            WCNPPQ+HFDLS     +IA+YKAG+VPV YRR+PC++ GG++F   G+ YF +VLI NV GAGD++ V +KG
Sbjct:   95 FNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKG 212          

HSP 2 Score: 32.7278 bits (73), Expect = 2.173e-38
Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W DA ATFY              YGNL+ +GYG
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYG 84          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.265e-38
Identity = 66/123 (53.66%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC--VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C     P+WC  G SI +TAT+FC          GGWCNPP+ HFD++QPA   IA+YKAGIVP+ Y++V C R+GG+RFTING +YF LVLI+NV G G++  V IKG
Sbjct:   71 FNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKG 193          

HSP 2 Score: 36.1946 bits (82), Expect = 6.265e-38
Identity = 15/33 (45.45%), Postives = 17/33 (51.52%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGY 215
            GW  AHATFY              YGNLY++GY
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGY 59          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.164e-38
Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC-VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C  ++ +WC+ G S+ +TAT+ C          GGWCNPP+QHFD++QPA EQI  Y+ GIVPV+++RV CTR GG+RFTING+SYF LVLITNV G G +++V IKG
Sbjct:   67 FNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKG 188          

HSP 2 Score: 27.7202 bits (60), Expect = 8.164e-38
Identity = 13/28 (46.43%), Postives = 13/28 (46.43%), Query Frame = 3
Query:  135 ATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            ATFY              YGNLYS GYG
Sbjct:   29 ATFYGGSDASGTMGGACGYGNLYSTGYG 56          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.062e-37
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604
            F+ G  CGAC++I C  DP+WC PGS+ +TAT+FC            WCNPPQ+HFDLS     +IA+YKAG+VPV YRR+PC++ GG++F   G+ YF +VLI NV GAGD++ V +K
Sbjct:  101 FNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVK 217          

HSP 2 Score: 32.7278 bits (73), Expect = 1.062e-37
Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W DA ATFY              YGNL+ +GYG
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYG 90          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.064e-37
Identity = 67/122 (54.92%), Postives = 86/122 (70.49%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC-VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G +CGAC+ I C  +   WC+PG SI +TAT+ C          GGWCNPP++HFD+SQPA   IA Y+AGIVPV+++RVPC ++GGIRFTI+G  YF LV + NV G+G V  VSIKG
Sbjct:   66 FNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKG 187          

HSP 2 Score: 33.113 bits (74), Expect = 1.064e-37
Identity = 15/33 (45.45%), Postives = 16/33 (48.48%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            WT A ATFY              YGNLY+ GYG
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYG 55          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 3.989e-37
Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 2
Query:  197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDP--RWCRP-GSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            L  +G   ++++     F+ G  CG C+ I C  D   RWC+P G++ VTAT+ C          GGWCNPP++HFD+SQPA E+I  Y+AGIVPV YRRV C R GG+RFT+ G  +F LVL+ NV G+G V AVS++G
Sbjct:   53 LYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRG 192          

HSP 2 Score: 31.5722 bits (70), Expect = 3.989e-37
Identity = 14/33 (42.42%), Postives = 15/33 (45.45%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W  A ATFY              YGNLY +GYG
Sbjct:   27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYG 59          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 1.497e-36
Identity = 65/119 (54.62%), Postives = 80/119 (67.23%), Query Frame = 2
Query:  257 GMICGACFDIKC-VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            G  CGAC+ + C  +  RWC+ G S+ VTAT++C          GGWCNPP++HFD+SQPA E IA Y +GIVPV Y R PC R GGIRF I GH Y+ LVL+TNV G+G V A  +KG
Sbjct:   73 GASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKG 191          

HSP 2 Score: 35.039 bits (79), Expect = 1.497e-36
Identity = 16/35 (45.71%), Postives = 17/35 (48.57%), Query Frame = 3
Query:  114 QGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            Q WT A ATFY              YGN+YS GYG
Sbjct:   25 QQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYG 59          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.532e-36
Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGAC++I C + P+WC PGSI +TAT+FC            WCNPPQ+HFDLSQP   +IA+YKAG+VPV +RRVPC + GG++F I G+ +F ++L  NV GAG VRA+ IKG
Sbjct:  133 FNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPND--NWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKG 250          

HSP 2 Score: 28.8758 bits (63), Expect = 2.532e-36
Identity = 12/34 (35.29%), Postives = 15/34 (44.12%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW    ATFY              YG+L+ +GYG
Sbjct:   89 GWGHGRATFYGDINGGETQQGACGYGDLHKQGYG 122          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.540e-36
Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC--VNDPRWCRPGS-IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C     P WC+ G+ + +TAT+ C          GGWCNPP+ HFD+SQPA E I  Y+AGIVPV Y++V C R GG+RFT++G +YF LVLITNV G+G V+A+S+KG
Sbjct:   70 FNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKG 192          

HSP 2 Score: 33.4982 bits (75), Expect = 2.540e-36
Identity = 14/34 (41.18%), Postives = 16/34 (47.06%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW    ATFY              YGNLY++GYG
Sbjct:   26 GWVSGTATFYGGKDASGTMGGACGYGNLYTQGYG 59          
The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP25_ARATH2.172e-3848.18Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP22_ARATH2.173e-3852.50Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP17_ARATH6.265e-3853.66Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP12_ORYSJ8.164e-3854.92Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH1.062e-3752.10Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP33_ORYSJ1.064e-3754.92Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ3.989e-3748.57Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXPA9_ORYSJ1.497e-3654.62Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP24_ARATH2.532e-3654.17Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP28_ORYSJ2.540e-3652.03Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bp
GACGCCTCTCTTTCTCTCTTAAAAAGATACGCAAGCAAAAGGGTTTCAGG
AACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTC
ATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGTG
GGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTA
TACAGCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCGCTTTT
CACATTGGCATGATCTGTGGGGCTTGTTTTGATATCAAGTGTGTTAATGA
CCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACTGATTTTT
GCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATCCT
CCCCAGCAACATTTTGACCTCTCTCAGCCTGCGCTTGAACAAATTGCTCA
GTACAAAGCTGGTATAGTACCTGTGTCTTACAGAAGGGTTCCATGCACTA
GGAACGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTA
GTCCTAATCACAAACGTCCGAGGCGCTGGTGATGTGCGTGCTGTTTCAAT
CAAAGGGT
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