CN188976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 2.172e-38 Identity = 66/137 (48.18%), Postives = 91/137 (66.42%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L ++G + ++ F+ G CGAC+ I CV+DP+WC PG+I +TAT+FC G WCNPPQ+HFDLS P +IAQYKAG+VPV YRR+ C R GG++F G+ YF ++L NV GAGD++ + +KG Sbjct: 81 LFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKG 215 HSP 2 Score: 31.187 bits (69), Expect = 2.172e-38 Identity = 13/33 (39.39%), Postives = 16/33 (48.48%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W DA ATFY YG+L+ +GYG Sbjct: 55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYG 87
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 2.173e-38 Identity = 63/120 (52.50%), Postives = 84/120 (70.00%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CGAC++I C DP+WC PGS+ +TAT+FC WCNPPQ+HFDLS +IA+YKAG+VPV YRR+PC++ GG++F G+ YF +VLI NV GAGD++ V +KG Sbjct: 95 FNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKG 212 HSP 2 Score: 32.7278 bits (73), Expect = 2.173e-38 Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W DA ATFY YGNL+ +GYG Sbjct: 52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYG 84
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.265e-38 Identity = 66/123 (53.66%), Postives = 84/123 (68.29%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC--VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C P+WC G SI +TAT+FC GGWCNPP+ HFD++QPA IA+YKAGIVP+ Y++V C R+GG+RFTING +YF LVLI+NV G G++ V IKG Sbjct: 71 FNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAGGGEISKVWIKG 193 HSP 2 Score: 36.1946 bits (82), Expect = 6.265e-38 Identity = 15/33 (45.45%), Postives = 17/33 (51.52%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGY 215 GW AHATFY YGNLY++GY Sbjct: 27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGY 59
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 8.164e-38 Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC-VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C ++ +WC+ G S+ +TAT+ C GGWCNPP+QHFD++QPA EQI Y+ GIVPV+++RV CTR GG+RFTING+SYF LVLITNV G G +++V IKG Sbjct: 67 FNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKG 188 HSP 2 Score: 27.7202 bits (60), Expect = 8.164e-38 Identity = 13/28 (46.43%), Postives = 13/28 (46.43%), Query Frame = 3 Query: 135 ATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 ATFY YGNLYS GYG Sbjct: 29 ATFYGGSDASGTMGGACGYGNLYSTGYG 56
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 1.062e-37 Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604 F+ G CGAC++I C DP+WC PGS+ +TAT+FC WCNPPQ+HFDLS +IA+YKAG+VPV YRR+PC++ GG++F G+ YF +VLI NV GAGD++ V +K Sbjct: 101 FNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVK 217 HSP 2 Score: 32.7278 bits (73), Expect = 1.062e-37 Identity = 14/33 (42.42%), Postives = 16/33 (48.48%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W DA ATFY YGNL+ +GYG Sbjct: 58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYG 90
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.064e-37 Identity = 67/122 (54.92%), Postives = 86/122 (70.49%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC-VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G +CGAC+ I C + WC+PG SI +TAT+ C GGWCNPP++HFD+SQPA IA Y+AGIVPV+++RVPC ++GGIRFTI+G YF LV + NV G+G V VSIKG Sbjct: 66 FNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKG 187 HSP 2 Score: 33.113 bits (74), Expect = 1.064e-37 Identity = 15/33 (45.45%), Postives = 16/33 (48.48%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 WT A ATFY YGNLY+ GYG Sbjct: 23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYG 55
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 3.989e-37 Identity = 68/140 (48.57%), Postives = 91/140 (65.00%), Query Frame = 2 Query: 197 LIQRGIWDKHSSSEHCAFHIGMICGACFDIKCVNDP--RWCRP-GSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 L +G ++++ F+ G CG C+ I C D RWC+P G++ VTAT+ C GGWCNPP++HFD+SQPA E+I Y+AGIVPV YRRV C R GG+RFT+ G +F LVL+ NV G+G V AVS++G Sbjct: 53 LYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRG 192 HSP 2 Score: 31.5722 bits (70), Expect = 3.989e-37 Identity = 14/33 (42.42%), Postives = 15/33 (45.45%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W A ATFY YGNLY +GYG Sbjct: 27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYG 59
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 1.497e-36 Identity = 65/119 (54.62%), Postives = 80/119 (67.23%), Query Frame = 2 Query: 257 GMICGACFDIKC-VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 G CGAC+ + C + RWC+ G S+ VTAT++C GGWCNPP++HFD+SQPA E IA Y +GIVPV Y R PC R GGIRF I GH Y+ LVL+TNV G+G V A +KG Sbjct: 73 GASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKG 191 HSP 2 Score: 35.039 bits (79), Expect = 1.497e-36 Identity = 16/35 (45.71%), Postives = 17/35 (48.57%), Query Frame = 3 Query: 114 QGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 Q WT A ATFY YGN+YS GYG Sbjct: 25 QQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYG 59
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 2.532e-36 Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CGAC++I C + P+WC PGSI +TAT+FC WCNPPQ+HFDLSQP +IA+YKAG+VPV +RRVPC + GG++F I G+ +F ++L NV GAG VRA+ IKG Sbjct: 133 FNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPND--NWCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKG 250 HSP 2 Score: 28.8758 bits (63), Expect = 2.532e-36 Identity = 12/34 (35.29%), Postives = 15/34 (44.12%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW ATFY YG+L+ +GYG Sbjct: 89 GWGHGRATFYGDINGGETQQGACGYGDLHKQGYG 122
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2) HSP 1 Score: 138.272 bits (347), Expect = 2.540e-36 Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC--VNDPRWCRPGS-IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C P WC+ G+ + +TAT+ C GGWCNPP+ HFD+SQPA E I Y+AGIVPV Y++V C R GG+RFT++G +YF LVLITNV G+G V+A+S+KG Sbjct: 70 FNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKG 192 HSP 2 Score: 33.4982 bits (75), Expect = 2.540e-36 Identity = 14/34 (41.18%), Postives = 16/34 (47.06%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW ATFY YGNLY++GYG Sbjct: 26 GWVSGTATFYGGKDASGTMGGACGYGNLYTQGYG 59 The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bpback to top |