CN188976

Overview
NameCN188976
Unique NameCN188976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.065e-30
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGG--WCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604
            F  G  CG C+ ++CV     C  GS  I VTAT+ C          GG  WCNPP+ HFDLS+PA  ++A ++AGIVPV YRRVPC R GG+RF + G+ Y+ L  + NV GAGDV  + +K
Sbjct:   80 FKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVK 201          

HSP 2 Score: 37.3502 bits (85), Expect = 1.065e-30
Identity = 16/33 (48.48%), Postives = 17/33 (51.52%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            WT AHATFY              YGNLY+ GYG
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYG 69          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.389e-30
Identity = 59/123 (47.97%), Postives = 80/123 (65.04%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC--VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C     P WC+ G +I VT T++C          GGWCN  + HFD+SQPA E I  Y AGI+P+ Y++V C R GG+RFTING +YF LVL+TN+ G+G + ++S+KG
Sbjct:   66 FNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKG 186          

HSP 2 Score: 30.0314 bits (66), Expect = 1.389e-30
Identity = 13/33 (39.39%), Postives = 14/33 (42.42%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W    ATFY              YGNLY +GYG
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYG 55          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.642e-30
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604
            F  G  CG C++++CV  P WC PGS  + +T T+ C          GGWCNPP+ HFD++ P+  ++AQ  AGIVPV YRRVPC R GG+RF + G+ Y+ L+ + NV GAGDV ++S+K
Sbjct:   97 FADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVK 216          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.027e-29
Identity = 61/122 (50.00%), Postives = 79/122 (64.75%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F  G  CG C++++CVN   WC  GS  + VTATDFC          GGWCN P++HF++S+ A  ++A+ KA IVPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KG
Sbjct:   77 FGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKG 198          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.293e-29
Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  248 FHIGMICGACFDIKC--VNDPRWC-RPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQY-KAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F  G  CG C+ ++C    DP+WC R  ++ VTAT+FC           GWCN P+ HFD+S PA  +IA+    GIVPV YRRV C R GG+RFT+ G   FN+V+I+NV G G VR+V+++G
Sbjct:   70 FRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRG 188          

HSP 2 Score: 27.7202 bits (60), Expect = 4.293e-29
Identity = 12/34 (35.29%), Postives = 14/34 (41.18%), Query Frame = 3
Query:  117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            GW  AHAT+Y              Y N Y  G+G
Sbjct:   26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFG 59          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGAC +++CVN  RWC  GS  + VTATDFC          GGWCN P++H +LS  A   IA+ +A ++P+ YRRV C R GG+RF+++G S+F  VLI+NV   G+V  V +KG
Sbjct:   73 FNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKG 194          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.457e-27
Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCV--NDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CG C+ I C     P WC+ G +I VT T++           GGWCN  + +FD+SQPA E I  Y AGIVP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KG
Sbjct:   66 FNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKG 177          

HSP 2 Score: 26.9498 bits (58), Expect = 6.457e-27
Identity = 12/33 (36.36%), Postives = 13/33 (39.39%), Query Frame = 3
Query:  120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218
            W    ATFY              YGNLY + YG
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYG 55          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 57/120 (47.50%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F+ G  CGAC++I C  +P+ C  GSI +TATD C            WC  P +HFDLS P   +IAQ KA +VPV YRRVPC + GG++F + G+     +L  NV GAGD+ AVS KG
Sbjct:   89 FNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKG 201          
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.886e-18
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607
            F  G  CGAC+++K  +        ++ VTAT+                    +HFDL+ PA   IA+ K G+VPVSYR+V C R GGI++TI G+  +N+V++ NV GAGDV  +++KG
Sbjct:  124 FDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKG 228          

HSP 2 Score: 22.7126 bits (47), Expect = 6.886e-18
Identity = 7/9 (77.78%), Postives = 7/9 (77.78%), Query Frame = 3
Query:  120 WTDAHATFY 146
            W D HATFY
Sbjct:   82 WVDGHATFY 90          
The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP30_ORYSJ1.065e-3047.97Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP19_ORYSJ1.389e-3047.97Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ3.642e-3047.93Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ4.027e-2950.00Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH4.293e-2947.58Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP20_ARATH5.815e-2847.54Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP20_ORYSJ6.457e-2746.34Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH1.584e-2547.50Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP26_ORYSJ6.886e-1839.17Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001C01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bp
GACGCCTCTCTTTCTCTCTTAAAAAGATACGCAAGCAAAAGGGTTTCAGG
AACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTC
ATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCCACTTTTTATGGTG
GGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTA
TACAGCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCGCTTTT
CACATTGGCATGATCTGTGGGGCTTGTTTTGATATCAAGTGTGTTAATGA
CCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTACTGCCACTGATTTTT
GCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTGGCTGGTGCAATCCT
CCCCAGCAACATTTTGACCTCTCTCAGCCTGCGCTTGAACAAATTGCTCA
GTACAAAGCTGGTATAGTACCTGTGTCTTACAGAAGGGTTCCATGCACTA
GGAACGGAGGCATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTA
GTCCTAATCACAAACGTCCGAGGCGCTGGTGATGTGCGTGCTGTTTCAAT
CAAAGGGT
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