CN188976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.065e-30 Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGG--WCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604 F G CG C+ ++CV C GS I VTAT+ C GG WCNPP+ HFDLS+PA ++A ++AGIVPV YRRVPC R GG+RF + G+ Y+ L + NV GAGDV + +K Sbjct: 80 FKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVK 201 HSP 2 Score: 37.3502 bits (85), Expect = 1.065e-30 Identity = 16/33 (48.48%), Postives = 17/33 (51.52%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 WT AHATFY YGNLY+ GYG Sbjct: 37 WTPAHATFYGDETASETMGGACGYGNLYASGYG 69
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.389e-30 Identity = 59/123 (47.97%), Postives = 80/123 (65.04%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC--VNDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C P WC+ G +I VT T++C GGWCN + HFD+SQPA E I Y AGI+P+ Y++V C R GG+RFTING +YF LVL+TN+ G+G + ++S+KG Sbjct: 66 FNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKG 186 HSP 2 Score: 30.0314 bits (66), Expect = 1.389e-30 Identity = 13/33 (39.39%), Postives = 14/33 (42.42%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W ATFY YGNLY +GYG Sbjct: 23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYG 55
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 3.642e-30 Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIK 604 F G CG C++++CV P WC PGS + +T T+ C GGWCNPP+ HFD++ P+ ++AQ AGIVPV YRRVPC R GG+RF + G+ Y+ L+ + NV GAGDV ++S+K Sbjct: 97 FADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVK 216
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.027e-29 Identity = 61/122 (50.00%), Postives = 79/122 (64.75%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F G CG C++++CVN WC GS + VTATDFC GGWCN P++HF++S+ A ++A+ KA IVPV +RRV C R GG+RFTI G + F VLITNV G+V AV +KG Sbjct: 77 FGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKG 198
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.293e-29 Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 2 Query: 248 FHIGMICGACFDIKC--VNDPRWC-RPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQY-KAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F G CG C+ ++C DP+WC R ++ VTAT+FC GWCN P+ HFD+S PA +IA+ GIVPV YRRV C R GG+RFT+ G FN+V+I+NV G G VR+V+++G Sbjct: 70 FRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCPTNNN-----NGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRG 188 HSP 2 Score: 27.7202 bits (60), Expect = 4.293e-29 Identity = 12/34 (35.29%), Postives = 14/34 (41.18%), Query Frame = 3 Query: 117 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 GW AHAT+Y Y N Y G+G Sbjct: 26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFG 59
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28 Identity = 58/122 (47.54%), Postives = 79/122 (64.75%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGS--IFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CGAC +++CVN RWC GS + VTATDFC GGWCN P++H +LS A IA+ +A ++P+ YRRV C R GG+RF+++G S+F VLI+NV G+V V +KG Sbjct: 73 FNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKG 194
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 6.457e-27 Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCV--NDPRWCRPG-SIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CG C+ I C P WC+ G +I VT T++ GGWCN + +FD+SQPA E I Y AGIVP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KG Sbjct: 66 FNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKG 177 HSP 2 Score: 26.9498 bits (58), Expect = 6.457e-27 Identity = 12/33 (36.36%), Postives = 13/33 (39.39%), Query Frame = 3 Query: 120 WTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYG 218 W ATFY YGNLY + YG Sbjct: 23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYG 55
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25 Identity = 57/120 (47.50%), Postives = 73/120 (60.83%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F+ G CGAC++I C +P+ C GSI +TATD C WC P +HFDLS P +IAQ KA +VPV YRRVPC + GG++F + G+ +L NV GAGD+ AVS KG Sbjct: 89 FNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPG-------SAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKG 201
BLAST of CN188976 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.886e-18 Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 2 Query: 248 FHIGMICGACFDIKCVNDPRWCRPGSIFVTATDFCXXXXXXXXXXGGWCNPPQQHFDLSQPALEQIAQYKAGIVPVSYRRVPCTRNGGIRFTINGHSYFNLVLITNVRGAGDVRAVSIKG 607 F G CGAC+++K + ++ VTAT+ +HFDL+ PA IA+ K G+VPVSYR+V C R GGI++TI G+ +N+V++ NV GAGDV +++KG Sbjct: 124 FDNGAGCGACYELKGDSGK------TVVVTATNQAPPPVNGMKG---------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKG 228 HSP 2 Score: 22.7126 bits (47), Expect = 6.886e-18 Identity = 7/9 (77.78%), Postives = 7/9 (77.78%), Query Frame = 3 Query: 120 WTDAHATFY 146 W D HATFY Sbjct: 82 WVDGHATFY 90 The following BLAST results are available for this feature:
BLAST of CN188976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188976 ID=CN188976; Name=CN188976; organism=Citrus sinensis; type=EST; length=608bpback to top |