CN182294

Overview
NameCN182294
Unique NameCN182294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ECOHS (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O9:H4 (strain HS) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +H
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDH 187
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ECODH (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / DH10B) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +H
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDH 187
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ECOBW (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / BW2952) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +H
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDH 187
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ECO8A (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O8 (strain IAI1) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +H
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDH 187
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ECO81 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O81 (strain ED1a) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +H
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDH 187
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ECO7I (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +H
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDH 187
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ECO55 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain 55989 / EAEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +H
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDH 187
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ECO45 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +H
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDH 187
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_ECO24 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    ++     +TT+I     FY AE +H
Sbjct:   43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDH 187
[Close]
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALTI (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhi GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1 
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187
The following BLAST results are available for this feature:
BLAST of CN182294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
MSRA_ECOHS2.905e-2342.76Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECODH2.905e-2342.76Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOBW2.905e-2342.76Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO8A2.905e-2342.76Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO812.905e-2342.76Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO7I2.905e-2342.76Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO552.905e-2342.76Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO452.905e-2342.76Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO242.905e-2342.76Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SALTI3.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182294 ID=CN182294; Name=CN182294; organism=Citrus sinensis; type=EST; length=653bp
GAGGTCTCTATGGTTCTCTCAAAGAGATATCTATTTTTCTCCGTCCTCCA
TCTTCTTTTATTAACGGATACAGCATTGTGTATTCGGTTTCCGGATCGGG
TCTCTACCTCCATTAATGACGAATTGGGCCGGCCCCTAAAAGCGGCGGTT
TTCGCTCTTGGTAGCTTCTGGAGATCCGAAGCCGTATTCGGCTGCTTAAA
CGGAGTGGTAAGGACCACTGTCGGCTACGCTGGCGGATCCAAAACCAACC
CCGAATTCCGCAACCTTGGTGATCATGCCGAGTCCGTACAGGTTGAATAT
GATCCCAGGGTGATCAATTTTAGGCAACTTTTGGAAGTTTTTTGGACCAG
TCATGATTGTAGGCAAGTATTTGGGCAAGGTCCTGATGTGGGTAATCAAT
ACAGGTCCATTATTTTCACTAATGGAACAGAAGAATCCAGATTGGCCGCT
CATAGTAAAGAAAGGGAGCAGATGAAATCGAAGAGCAGCATAGTGACTAC
TCAAATTCAACAACTCGTAGCTTTTTATCCTGCAGAACCTGAACATCAGG
TTTTGTAATTTTTGCTCTCTCTTTCTCTCTCATACTCTGTTCAACAATTG
TGGAAGCATAGAGTAAGCTGTTGTGATTAGCAGGATTCCAGCAAATTTCT
TAT
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