CN182294

Overview
NameCN182294
Unique NameCN182294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALPK (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A (strain AKU_12601) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALPC (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi C (strain RKS4594) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALPA (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALHS (Peptide methionine sulfoxide reductase msrA OS=Salmonella heidelberg (strain SL476) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALG2 (Peptide methionine sulfoxide reductase msrA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALEP (Peptide methionine sulfoxide reductase msrA OS=Salmonella enteritidis PT4 (strain P125109) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALDC (Peptide methionine sulfoxide reductase msrA OS=Salmonella dublin (strain CT_02021853) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALCH (Peptide methionine sulfoxide reductase msrA OS=Salmonella choleraesuis GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALA4 (Peptide methionine sulfoxide reductase msrA OS=Salmonella agona (strain SL483) GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 61/145 (42.07%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI + QLL+ FW +HD  Q   QG D G QYRS I+    E++  A  S+ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQAAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_METMP (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis GN=msrA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEF----RNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEH 546
            +K  VF +G FW +E VF  +NGVV T VG+ GG+  NP +    R    H E V+++YDP +I++ +LL++FW +H+      QG DVG QY S IF    E+  +A  S E+ Q  +   IVT  I++  +FYPAE  H
Sbjct:    4 IKTTVFGMGCFWGAEEVFRKINGVVSTEVGFMGGTIKNPTYGQVCRGKSGHIEVVKIDYDPEIISYDELLDLFWNNHNPTTPNKQGWDVGEQYSSYIFYFDDEQKLIAEKSLEKMQENTDLKIVTI-IEKAGSFYPAEEYH 143          
The following BLAST results are available for this feature:
BLAST of CN182294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
MSRA_SALPK3.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPC3.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPA3.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALHS3.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALG23.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALEP3.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALDC3.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALCH3.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALA43.794e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_METMP3.794e-2341.13Peptide methionine sulfoxide reductase msrA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182294 ID=CN182294; Name=CN182294; organism=Citrus sinensis; type=EST; length=653bp
GAGGTCTCTATGGTTCTCTCAAAGAGATATCTATTTTTCTCCGTCCTCCA
TCTTCTTTTATTAACGGATACAGCATTGTGTATTCGGTTTCCGGATCGGG
TCTCTACCTCCATTAATGACGAATTGGGCCGGCCCCTAAAAGCGGCGGTT
TTCGCTCTTGGTAGCTTCTGGAGATCCGAAGCCGTATTCGGCTGCTTAAA
CGGAGTGGTAAGGACCACTGTCGGCTACGCTGGCGGATCCAAAACCAACC
CCGAATTCCGCAACCTTGGTGATCATGCCGAGTCCGTACAGGTTGAATAT
GATCCCAGGGTGATCAATTTTAGGCAACTTTTGGAAGTTTTTTGGACCAG
TCATGATTGTAGGCAAGTATTTGGGCAAGGTCCTGATGTGGGTAATCAAT
ACAGGTCCATTATTTTCACTAATGGAACAGAAGAATCCAGATTGGCCGCT
CATAGTAAAGAAAGGGAGCAGATGAAATCGAAGAGCAGCATAGTGACTAC
TCAAATTCAACAACTCGTAGCTTTTTATCCTGCAGAACCTGAACATCAGG
TTTTGTAATTTTTGCTCTCTCTTTCTCTCTCATACTCTGTTCAACAATTG
TGGAAGCATAGAGTAAGCTGTTGTGATTAGCAGGATTCCAGCAAATTTCT
TAT
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