CN182294

Overview
NameCN182294
Unique NameCN182294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALPB (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=msrA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.955e-23
Identity = 61/145 (42.07%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  136 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            ++ A FA+G FW  E +F  L GV  T  GYAGG   NP +R +      HAE+V++ YDP VI++ QLL++FW +HD  Q   QG D G QYRS I+    E++  A  S ER Q    ++     +TT+I     FY AE EH
Sbjct:   43 MEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASCERFQSAMAAAGDHRPITTEIAHATPFYYAEDEH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_SALAI (Peptide methionine sulfoxide reductase msrA OS=Salinispora arenicola (strain CNS-205) GN=msrA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 66/161 (40.99%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  115 NDELGRPL--------KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM-----KSKSSIVTTQIQQLVAFYPAEPEH 546
            ++ LG PL        + AVF +G FW +E +F  L GV+ T+VGYAGG   NP +  +      HAE VQV YDP  I +  LL+VFW +HD  Q   QG DVG QYRS I+T  T E +L A    R+       ++    +TT+I  L  +Y AE  H
Sbjct:   30 HEVLGTPLAGPFPEGTQVAVFGMGCFWGAERLFWTLPGVLTTSVGYAGGYTPNPSYEEVCSGRTGHAEVVQVRYDPTKIAYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYT--TTEEQLTAAQASRDAFAPVVARAGKGEITTEIGPLGDYYFAEDYH 188          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 59/139 (42.45%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKER-EQMKSKSSIVTTQIQQLVAFYPAEPEH 546
            A F  G FW  E  F  ++GVV T VGY GG   NP + +    L  HAE V+V +DP V+ +  LL+VFW+ HD   +  QGPDVG QYRS+IF +  E+ R A  S+ R E+       + T I+    FY AE  H
Sbjct:   10 ATFGAGCFWGVEDAFRKVDGVVSTRVGYMGGHLENPTYEDVCTGLTGHAEVVEVTFDPDVVGYSDLLDVFWSIHDPTTLNRQGPDVGEQYRSVIFYHSDEQRRAAIESRRRLEESGRFRDRIVTAIEPAGTFYEAEEYH 148          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_YERPY (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +H
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_YERPS (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +H
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_YERPP (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis (strain Pestoides F) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +H
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_YERPN (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +H
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_YERPG (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +H
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_YERPE (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +H
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDH 187          
BLAST of CN182294 vs. ExPASy Swiss-Prot
Match: MSRA_YERPB (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.442e-22
Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  145 AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGD----HAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSS----IVTTQIQQLVAFYPAEPEH 546
            A FA+G FW +E +F    GV  T  GY+GG   NP +  +      HAE V+V +DP VI+++QLL++FW +HD  Q   QG DVG QYRS I+    E+   A  S+ER Q   + +    ++T++I   + FY AE +H
Sbjct:   46 AFFAMGCFWGAERLFWQQPGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDH 187          
The following BLAST results are available for this feature:
BLAST of CN182294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
MSRA_SALPB4.955e-2342.07Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALAI8.452e-2340.99Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_METTH8.452e-2342.45Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_YERPY1.442e-2240.14Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPS1.442e-2240.14Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPP1.442e-2240.14Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPN1.442e-2240.14Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPG1.442e-2240.14Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPE1.442e-2240.14Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPB1.442e-2240.14Peptide methionine sulfoxide reductase msrA OS=Yer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182294 ID=CN182294; Name=CN182294; organism=Citrus sinensis; type=EST; length=653bp
GAGGTCTCTATGGTTCTCTCAAAGAGATATCTATTTTTCTCCGTCCTCCA
TCTTCTTTTATTAACGGATACAGCATTGTGTATTCGGTTTCCGGATCGGG
TCTCTACCTCCATTAATGACGAATTGGGCCGGCCCCTAAAAGCGGCGGTT
TTCGCTCTTGGTAGCTTCTGGAGATCCGAAGCCGTATTCGGCTGCTTAAA
CGGAGTGGTAAGGACCACTGTCGGCTACGCTGGCGGATCCAAAACCAACC
CCGAATTCCGCAACCTTGGTGATCATGCCGAGTCCGTACAGGTTGAATAT
GATCCCAGGGTGATCAATTTTAGGCAACTTTTGGAAGTTTTTTGGACCAG
TCATGATTGTAGGCAAGTATTTGGGCAAGGTCCTGATGTGGGTAATCAAT
ACAGGTCCATTATTTTCACTAATGGAACAGAAGAATCCAGATTGGCCGCT
CATAGTAAAGAAAGGGAGCAGATGAAATCGAAGAGCAGCATAGTGACTAC
TCAAATTCAACAACTCGTAGCTTTTTATCCTGCAGAACCTGAACATCAGG
TTTTGTAATTTTTGCTCTCTCTTTCTCTCTCATACTCTGTTCAACAATTG
TGGAAGCATAGAGTAAGCTGTTGTGATTAGCAGGATTCCAGCAAATTTCT
TAT
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