CN182290

Overview
NameCN182290
Unique NameCN182290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR12_HORVU (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.882e-27
Identity = 62/144 (43.06%), Postives = 85/144 (59.03%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQG-KITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            A N P+DY+  HN AR++VG+G +SW  KL  ++  +A +   +C L+      Y E I W + G    A + V   ++ K  Y+  SNTCA  G  C  YTQVVWR S  +GCA+  CNNN  + F+ CNY+PRGN+ GQ PY
Sbjct:   24 AQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQH-SGGPYGENIFWGSAGADWKAADAVNSWVNEKKDYNYGSNTCAA-GKVCGHYTQVVWRASTSIGCARVVCNNNRGV-FITCNYEPRGNIVGQKPY 164          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PRMS_MAIZE (Pathogenesis-related protein PRMS OS=Zea mays GN=PRMS PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.291e-26
Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = -3
Query:  153 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQG-KITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 581
            + N P+DYL   N ARA+VG+GP++W  KL  ++ K+A +  G+C L+      Y E I W + G    A + V+  +D K  Y+  +N+CA  G  C  YTQVVWR +  +GCA+  C +N  + F+ICNY+PRGN+ G  PY
Sbjct:   27 SENSPQDYLTPQNSARAAVGVGPVTWSTKLQQFAEKYAAQRAGDCRLQH-SGGPYGENIFWGSAGFDWKAVDAVRSWVDEKQWYNYATNSCAA-GKVCGHYTQVVWRATTSIGCARVVCRDNRGV-FIICNYEPRGNIAGMKPY 167          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR1A_SOLLC (Pathogenesis-related protein 1A1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.515e-24
Identity = 63/136 (46.32%), Postives = 79/136 (58.09%), Query Frame = -3
Query:  174 AHNKPEDYLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGN 581
            A    E++L AHN AR  VG+GPM+W   LA Y+  +A +   +C +       Y E +A +   ++ A   VKM  D K  YD NSNTCA  G  C  YTQVVWR SVRLGCA+ RCN+     F+ CNYDP GN
Sbjct:   21 AQTPRENFLNAHNAARRRVGVGPMTWDDGLAAYAQNYANQRADDCGMIHSD-GPYGENLAAAFP-QLNAAGAVKMWDDEKQWYDYNSNTCA-PGKVCGHYTQVVWRKSVRLGCARVRCNSGWV--FITCNYDPPGN 151          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: ST14_SOLTU (STS14 protein OS=Solanum tuberosum GN=STS14 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.079e-20
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = -3
Query:  153 EDYLKAHNEARASVGIGPMSWVYKLADYSHK--HAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQNPY 566
            +++L AHN+AR+ VG+GP++W   LA  +      Q+ K NC+       KY     W++   +T    V   +  K  Y+  +N+C     KC +YTQ+VW+ S+ LGCA+  C   G     +C Y+P GNV G+ PY
Sbjct:   77 QEFLDAHNKARSEVGVGPLTWSPMLAKETSLLVRYQRDKQNCSFANLSNGKYGGNQLWASGTVVTPRMAVDSWVAEKKFYNYENNSCT-GDDKCGVYTQIVWKKSIELGCAQRTC-YEGPATLTVCFYNPPGNVIGEKPY 214          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: PR1_MEDTR (Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.206e-18
Identity = 50/137 (36.50%), Postives = 77/137 (56.20%), Query Frame = -3
Query:  153 YLKAHNEARASVGIGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGKITATEFVKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN-GTLNFVICNYDPRGNVFGQNPY 560
            +L   N ARA+VG+ P+ W  KL  Y+  +A + + +C L+      Y E I W +       + V   +D K  Y+   N+C ++G  C  YTQVVW ++ ++GCA   C+++ GT  F+ CNYDP GN +G+ PY
Sbjct:   41 FLIPQNIARAAVGLRPLVWDDKLTHYAQWYANQRRNDCALEHSN-GPYGENIFWGSGVGWNPAQAVSAWVDEKQFYNYWHNSC-VDGEMCGHYTQVVWGSTTKVGCASVVCSDDKGT--FMTCNYDPPGNYYGERPY 173          
BLAST of CN182290 vs. ExPASy Swiss-Prot
Match: GPRL1_BOVIN (GLIPR1-like protein 1 OS=Bos taurus GN=GLIPR1L1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 51/152 (33.55%), Postives = 76/152 (50.00%), Query Frame = -3
Query:  153 EDYLKAHNEARASVG-----IGPMSWVYKLADYSHKHAQKLK---GNCNLKKPQVS---KYSETIAWSNQGKITATEF-VKMCMDGKPLYDDNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLN--FVICNYDPRGNVFGQNPY 566
            E+ L+ HNEAR +V      +  MSW   LA  +   A+K K    +C+ K  +     +Y+    W     I+A +F + M  D +  YD N+ +C+     C  YTQVVW  S ++GCA   C N G+ +   ++CNY P GN    +PY
Sbjct:   36 EECLRLHNEARTNVSPPAADMKYMSWDEALAKTAEAWAKKCKFIHNSCSSKSFKCHPTFQYAGENLWLGPLTISAAKFAINMWYDERKFYDFNTRSCS---QVCGHYTQVVWAYSYKVGCAVAVCPNLGSPDSALLVCNYAPAGNYPNMSPY 184          
The following BLAST results are available for this feature:
BLAST of CN182290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PR12_HORVU9.882e-2743.06Pathogenesis-related protein PRB1-2 OS=Hordeum vul... [more]
PRMS_MAIZE1.291e-2641.67Pathogenesis-related protein PRMS OS=Zea mays GN=P... [more]
PR1A_SOLLC3.515e-2446.32Pathogenesis-related protein 1A1 OS=Solanum lycope... [more]
ST14_SOLTU3.079e-2035.00STS14 protein OS=Solanum tuberosum GN=STS14 PE=2 S... [more]
PR1_MEDTR2.206e-1836.50Pathogenesis-related protein PR-1 OS=Medicago trun... [more]
GPRL1_BOVIN1.385e-1233.55GLIPR1-like protein 1 OS=Bos taurus GN=GLIPR1L1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182290 ID=CN182290; Name=CN182290; organism=Citrus sinensis; type=EST; length=583bp
GAGGGTTCAATTTATTTTTTTATTACTTGCGATAAATGGAAGCGAACACA
TAGCTTGATTTTATTGTTTTCGAATATCTGCCAACGGCATGACTTATTCA
TGCATAGCCCTCTGGTCTCATATATAGAGGAAAGTTTCTTTATGATCCAC
TAGTAAGGATTTTGACCAAAAACATTACCTCGGGGATCGTAGTTGCAAAT
GACAAAGTTGAGAGTCCCATTGTTATTGCACCTCTCTTTAGCACAACCTA
AACGCACAGAATTGCGCCACACAACTTGAGTATAGATTGCGCATTTCGTA
CCATTAAGAGCACAAGTATTAGAGTTGTCGTCGTATAATGGCTTCCCATC
CATACACATCTTCACGAACTCGGTGGCGGTAATCTTGCCCTGGTTGCTCC
ATGCAATTGTCTCGCTGTATTTGCTAACTTGGGGTTTCTTTAAATTGCAG
TTACCCTTTAGTTTTTGTGCATGTTTATGTGAATAATCCGCCAATTTGTA
GACCCATGACATCGGGCCAATGCCAACACTAGCACGAGCCTCGTTGTGAG
CTTTGAGGTAATCTTCAGGTTTATTGTGGGCAG
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