CN182282

Overview
NameCN182282
Unique NameCN182282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: AHPC_STAA3 (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain USA300) GN=ahpC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  299 DRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 679
            ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A RG FIID +GV+Q S IN   IGR        ++A QYV++NP EVCPA W+ G K+++P
Sbjct:   58 NQYEELQKLGVNVFSVSTDTHFVHKAWHD---HSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQP 181          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: AHPC_SHIFL (Alkyl hydroperoxide reductase subunit C OS=Shigella flexneri GN=ahpC PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  299 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 682
            +D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR   + LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   55 ADHYEELQKLGVDVYAVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: AHPC_ECOLI (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli (strain K12) GN=ahpC PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  299 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 682
            +D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR   + LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   55 ADHYEELQKLGVDVYAVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: AHPC_ECOL6 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O6 GN=ahpC PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  299 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 682
            +D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR   + LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   55 ADHYEELQKLGVDVYAVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: AHPC_ECO57 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O157:H7 GN=ahpC PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  299 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 682
            +D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR   + LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   55 ADHYEELQKLGVDVYAVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATLAP 179          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: AHPC_SALTY (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhimurium GN=ahpC PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  299 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 682
            +D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR   + LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   55 ADHYEELQKLGVDVYSVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 179          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: AHPC_SALTI (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhi GN=ahpC PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = -2
Query:  299 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 682
            +D Y E +KL  ++  VSTD+ F+H AW  +   S  +  +KY +I D T ++++++  +  D+G+A R  F++D +G+IQ   +    IGR   + LR ++A QYV  +P EVCPA WK G+ ++ P
Sbjct:   55 ADHYEELQKLGVDVYSVSTDTHFTHKAWHSS---SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAP 179          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: AHPC_BACSU (Alkyl hydroperoxide reductase subunit C OS=Bacillus subtilis GN=ahpC PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 49/127 (38.58%), Postives = 78/127 (61.42%), Query Frame = -2
Query:  299 DRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKP 679
            ++YA  ++L  E+  VSTD+ F H  W  +  K   +  + Y +I D +++IS+++ +L  + G+A RG FIID +GVIQ   IN   IGR     +  ++A QYV++NP EVCPA W+ G +++ P
Sbjct:   56 EQYAALKELGVEVYSVSTDTHFVHKGWHDSSEK---ISKITYAMIGDPSQTISRNFDVLDEETGLADRGTFIIDPDGVIQTVEINAGGIGRDASNLVNKVKAAQYVRQNPGEVCPAKWEEGGETLTP 179          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: TDXH2_THEAC (Probable peroxiredoxin 2 OS=Thermoplasma acidophilum GN=Ta0954 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 45/130 (34.62%), Postives = 82/130 (63.08%), Query Frame = -2
Query:  293 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDP 682
            ++RY +F+ L  E+LG+S DSV+SH+AW++  ++  G+ ++ +P+IADI K +++ Y ++    G  +RG+FIID   +++         GR++DE +R ++ALQ+  E      PA W+PG + ++  P
Sbjct:   48 TERYKDFQALGVELLGLSIDSVYSHIAWIRDIKEHFGI-EIPFPIIADIDKEVARQYNLIDEKSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRVIKALQFNWER-KLATPANWQPGQEGIEGAP 175          
BLAST of CN182282 vs. ExPASy Swiss-Prot
Match: TDXH2_PICTO (Probable peroxiredoxin 2 OS=Picrophilus torridus GN=PTO0727 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 50/143 (34.97%), Postives = 86/143 (60.14%), Query Frame = -2
Query:  254 SDRYAEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI*EG 682
            S RY +F++LN E++G+S DS+ SH+ W++   +  G+ ++++P+IADI K I++ Y ++  + G  +RG+FIID    ++         GR++DE LR+++ALQ    +     P  W+PGDK + P P   ++    I EG
Sbjct:   52 SRRYNDFKELNVELIGLSVDSLQSHIEWLKDIYEKFGI-EIQFPVIADINKEIAREYNLIDENAGNTVRGVFIIDPNQTVRWMIYYPAETGRNIDEILRSVKALQ-ANWSRKIATPVNWRPGDKGILPPPSTLEDALQRIREG 192          
The following BLAST results are available for this feature:
BLAST of CN182282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
AHPC_STAA32.940e-2139.37Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_SHIFL3.839e-2136.72Alkyl hydroperoxide reductase subunit C OS=Shigell... [more]
AHPC_ECOLI3.839e-2136.72Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECOL63.839e-2136.72Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECO573.839e-2136.72Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_SALTY5.014e-2136.72Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_SALTI5.014e-2136.72Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_BACSU6.549e-2138.58Alkyl hydroperoxide reductase subunit C OS=Bacillu... [more]
TDXH2_THEAC3.250e-2034.62Probable peroxiredoxin 2 OS=Thermoplasma acidophil... [more]
TDXH2_PICTO3.250e-2034.97Probable peroxiredoxin 2 OS=Picrophilus torridus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182282 ID=CN182282; Name=CN182282; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTGGCCACATATGATTCACAGTAACATTGATAACATG
AAGAGGACAATAACAAGAGATTTTGTTGTGTCTGCATTACAAAGGAAGTA
AAGAGGTGGACAAATCCAGTCCAATGCATTTATTCCCCACAGGCTGCTCC
GCAAAACTCAACAGTAAGTAGCAAAATCACATTACATGGAAAAACAAAAC
TCATCTACACCTCCCTAATAGACATAGATATGCATACGAGGTTCCAATGC
TAACCCCTCTTATATAGCTGCAAAGTACTCCTTGCTGAGTTTTGGGTCTG
GCTTCATGGATTTGTCCCCGGGCTTCCATCCTGCTGGGCAAACTTCATCT
GGGTTCTCCTGCACGTACTGCAAGGCCTGAAGTGTTCTCAGTGTCTCGTC
AACACTCCTACCAATGGCAAGGTTGTTAATGGTTGAGTGCTGGATGACTC
CTTCTTTGTCAATAATAAAGAGTCCTCTCAATGCAATTCCCTGATCAGGG
ATCAGAATACCATAGGATTTTGAAATTGATTTGGTGATATCAGCAATTAG
TGGGTACTTCAAATCACCAAGACCACCTGACTTTCTGTCTGTTTGGACCC
ATGCCAAGTGTGAAAACACACTGTCAGTTGAGACACCCAATATCTCTGTG
TTTAGCTTCTCAAATTCAGCATATCGGTCACTG
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