CN182280

Overview
NameCN182280
Unique NameCN182280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.672e-24
Identity = 58/101 (57.43%), Postives = 67/101 (66.34%), Query Frame = -1
Query:  173 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFMHSE-HAPL-SNDY 469
            TFGLVYTVYATA DPKKG +G IAP+AIG IVGANIL  G F G SMNPA SFGPAV S  + ++W+YWV               +F+ S  H PL SND+
Sbjct:  152 TFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTIFIGSNGHEPLPSNDF 252          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.852e-24
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TFGLVY VY+T  DPK+GSLG IAP+AIG IVGANIL  GPFSG SMNPAR+FGPA+    + D+WIYWV
Sbjct:  160 TFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWV 229          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.025e-23
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TF LVY VY+TA DPK+GS+G IAP+AIG IVGANIL  GPF G SMNPAR+FGPA+    + ++WIYWV
Sbjct:  160 TFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALVGWRWSNHWIYWV 229          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.767e-22
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TFG VY  YAT  DPK+G LGTIAP+A+GF++GAN+LA GPF G  MNPAR FGPA+    ++ +W+YW+
Sbjct:  161 TFGFVYAYYATVVDPKRGHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWL 230          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.730e-21
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TFGL+Y  YAT  DPK+G +GTIAP+A+GF++GAN+LA GPF G  MNPAR FGPA+    ++ +W+YW+
Sbjct:  156 TFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWL 225          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.952e-21
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TFGL+Y  YAT  DPK+G +GTIAP+A+GF++GAN+LA GPF G  MNPAR FGPA+    ++ +W+YW+
Sbjct:  157 TFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWL 226          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.465e-20
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TFGLVYTVYATA D + G  G IAP+AIG + GANILA GPF G +MNPAR+FGPA+   N++ +W+YW+
Sbjct:  159 TFGLVYTVYATAVDRRSGG-GDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWL 227          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.913e-20
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  176 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXGNVFM-HSEHAPLSND 469
            TF L++ VYAT  DP++ ++G + P+ +G +VGAN+LA GPFSG SMNPARSFGPA+ +G + D+W+YWV               +FM    H PL  D
Sbjct:  151 TFSLLFAVYATVVDPRR-AVGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAGVWADHWVYWVGPLIGGPLAGLVYDGLFMAQGGHEPLPRD 248          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.262e-20
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TFGL+YTVY TA DPK+G++  IAP+AIG IVGANIL  GPF G  MNPA +FGP++    +  +WI+WV
Sbjct:  152 TFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQWHQHWIFWV 221          
BLAST of CN182280 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = -1
Query:  260 TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 469
            TF L++ VYAT  D ++ ++G + P+ +G +VGANILA GP+SG SMNPARSFGPA+A+G + D+WIYWV
Sbjct:  150 TFSLLFAVYATVVDRRR-AVGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADHWIYWV 218          
The following BLAST results are available for this feature:
BLAST of CN182280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TIP13_ARATH1.672e-2457.43Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP31_ARATH2.852e-2471.43Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP32_ARATH7.025e-2367.14Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP32_MAIZE7.767e-2260.00Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP31_MAIZE1.730e-2158.57Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP31_ORYSJ2.952e-2158.57Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP32_ORYSJ1.465e-2062.86Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE1.913e-2046.46Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIPA_PHAVU4.262e-2060.00Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP43_ORYSJ1.240e-1958.57Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002D08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182280 ID=CN182280; Name=CN182280; organism=Citrus sinensis; type=EST; length=526bp
TTTACAACCTCCAAAACAAATGATTTAAAAAGAAGGATACCAAGAAACTA
AAGAAGAAAAGAAGAAAGAGCCAAAGCTGCTTTTCCTTCTTTTATTACAA
AAAAGAAAGAGCCAGAAGCAGGTGGTCAAATGATTTAACTAAACTTTTAA
ACAAAGTTTAACTAATTAATTAATAGTCATTAGATAGGGGTGCATGTTCA
GAGTGCATGAACACATTGCCATAGATGAGCCCCGCAAGGCCGCCGCCAAT
GAGAGGGCCAACCCAGTAGATCCAGTTGTCCTGGAAGTTGCCGCTGGCAA
CGGCAGGCCCGAAGGAACGGGCCGGGTTCATGGATCCACCGGAGAATGGG
CCGGCGGCCAGGATGTTGGCACCGACAATGAAACCAATGGCAATGGGTGC
AATGGTGCCCAATGATCCCTTCTTCGGGTCAGCTGCCGTGGCATAGACCG
TGTAGACCAAACCAAATGTGATGATGATCTCCATCACAACTCCTTCAATG
GCTCCAACTCCAGCAGCAACATTGTG
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