CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188918_ssr162 microsatellite CN188918_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8214 contig Csv1_Contig8214:183..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEB5 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=cysI PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.375e-40
Identity = 90/204 (44.12%), Postives = 125/204 (61.27%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT----LREIIEKYNLNVRITPNQNIILCDI 654
            ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A++  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R +   +     GW E  DG     L +++GRI     +T    LREI + +  + R+T NQN+I+  +
Sbjct:  195 ETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRVNRKRSRLKYTIVDHGYEKFKAEVELRAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEB8 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella baltica (strain OS185) GN=cysI PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.000e-40
Identity = 89/204 (43.63%), Postives = 125/204 (61.27%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT----LREIIEKYNLNVRITPNQNIILCDI 654
            ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A++  QR+ G R +RK SR+KY I   G E+F++ VE   G KFEP R +   +     GW E  DG     L +++GRI     +T    LREI + +  + R+T NQN+I+  +
Sbjct:  195 ETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAVMTVQRDWGNRVNRKRSRLKYTIVDHGYEQFKAEVELRAGVKFEPKRDVVIGDRGDRYGWVEGVDGKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEWM (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=cysI PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.224e-40
Identity = 90/213 (42.25%), Postives = 125/213 (58.69%), Query Frame = 1
Query:   28 DNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDI 654
            D+   T+  D  EP+YG  +LPRKFK+AV VP DN VD+ TND+G V V++E GE  GFNL  GGGMG TH    TFPRL +  G++  ED L   +A++  QR+ G R +RK SR+KY I  +G E F++ VE+  G KFEP R +   +     GW +  D      L ++ GRI       ++  LREI + +  + R+T NQN I+  +
Sbjct:  193 DDKVATSEGDDVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFVAVAEE-GELVGFNLVAGGGMGSTHGEVQTFPRLADDFGFIKAEDTLKFAEAVLKVQRDWGNRSNRKLSRLKYTIVKYGYEAFKAEVEKRAGVKFEPKRDVVIGDRGDRYGWIKGVDNKWHLTLFIEGGRIKDLPGQPLQTGLREIAKIHKGDFRMTSNQNFIIASV 404          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEPW (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=cysI PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.823e-40
Identity = 90/219 (41.10%), Postives = 127/219 (57.99%), Query Frame = 1
Query:   25 NDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            +D    T   +  EP+YG  +LPRKFK+AV VP DN VD+ TND+G V V++E GE  GFN+  GGGMG TH    TFPRL +  GY+  ED L   +A++  QR+ G R++RK SR+KY I   G + F++ VE+  G KFEP R +   +     GW +  D      L ++ GR+       ++  LREI + +  + R+T NQNII+  +  A K
Sbjct:  185 DDEKLVTTEGEEVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFVAVAEE-GELVGFNMVAGGGMGSTHGEVATFPRLADDFGYIKAEDTLKFAEAVMTVQRDWGNRENRKLSRLKYTIVKHGYDAFKAEVEKRTGIKFEPKRDVVIGDRGDRYGWKQGVDDNWHLTLFIEGGRVKDLPGQPLQTGLREIAKIHQGDFRMTSNQNIIIAGVPAADK 402          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEPA (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=cysI PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.593e-39
Identity = 89/219 (40.64%), Postives = 125/219 (57.08%), Query Frame = 1
Query:   25 NDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            +D    T   +  EP+YG  +LPRKFK+AV VP DN VD+ TND+G V V+ E  E  GFN+  GGGMG TH   +TFPRL +  GY+  ED L   +A++  QR+ G R++RK SR+KY I   G E F++ +E   G KFEP R +   +     GW +  D      L ++ GR+       ++  LREI + +  + R+T NQNII+  +  A K
Sbjct:  185 DDEKLVTTEGEEVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFVAVA-EGDELVGFNMVAGGGMGSTHGEVSTFPRLADDFGYIKAEDTLKFAEAVMTIQRDWGNRENRKLSRLKYTIVKHGFESFKAEIEARTGIKFEPKRDVVIGDRGDRYGWKQGVDDNWHLTLFIEGGRVKDFPGQPLQTGLREIAKVHQGDFRMTSNQNIIIAGVPSADK 402          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: ECM17_YEAST (Sulfite reductase [NADPH] subunit beta OS=Saccharomyces cerevisiae GN=ECM17 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 84/209 (40.19%), Postives = 133/209 (63.64%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVV-VVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHL---GWHEQGDGGLFCGLHVDNGRIAGK--------MKKTLREIIEKYNLNVRITPNQNIILCDI 654
            EPIYG  +LPRKFK  + VP  N VD+L+ D+G+V +V+ E    +G+N++VGGGMG TH  + T+PRLG  LG+V  EDI+  ++ IV+ QR++G R DRK++R+KY +   G+E F+  VE+Y+GKKFEP R    +EFKS++   GW +   G       ++NGR+           ++K    +++  + + R+T NQ++++ +I
Sbjct: 1063 EPIYGPTYLPRKFKFNIAVPPYNDVDVLSIDVGLVAIVNPETQIVEGYNVFVGGGMGTTHNNKKTYPRLGSCLGFVKTEDIIPPLEGIVIVQRDHGDRKDRKHARLKYTVDDMGVEGFKQKVEEYWGKKFEPER---PFEFKSNIDYFGWIKDETGLNHFTAFIENGRVEDTPDLPQKTGIRKVAEYMLKTNSGHFRLTGNQHLVISNI 1268          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEB2 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella baltica (strain OS223) GN=cysI PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.776e-39
Identity = 88/204 (43.14%), Postives = 123/204 (60.29%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT----LREIIEKYNLNVRITPNQNIILCDI 654
            ++ EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++   D++   +A++  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R +   +     GW E  D      L +++GRI     +T    LREI + +  + R+T NQN+I+  +
Sbjct:  195 ETVEPVYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTADVMKFAEAVMTVQRDWGNRVNRKRSRLKYTIVDHGYEKFKAEVELRAGVKFEPKRDVVIGDRGDRYGWVEGVDRKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGV 397          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_CHRSD (Sulfite reductase [NADPH] hemoprotein beta-component OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=cysI PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.544e-39
Identity = 80/208 (38.46%), Postives = 126/208 (60.58%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG-----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKA 663
            D  EP+Y   +LPRKFKVA+ +P +N VD+  +D+G +    + GE +GFN+ +GGGMG TH    TFPRL + +GY   + ++   +AI++ QR+NG R DRK +R+KY + + G++ FR  VE   G+   P R+L        LGW++  DG    GL V NGR+A      ++   +REI + ++ ++ +T NQN+I+  + +A
Sbjct:  206 DEVEPLYTRHYLPRKFKVALAIPPENDVDVFAHDVGFIA-DVQAGELKGFNVCIGGGMGMTHGEPATFPRLSDIVGYCTPDRVVAVAEAIMLVQRDNGNRHDRKQARLKYTVEALGVDGFRQEVEARLGEALSPARELTLTHNGDRLGWYQGEDGLWHYGLFVQNGRLADSDGGPQLMTGMREIAQAHDGDIVLTTNQNLIITQVPEA 412          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEHH (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella halifaxensis (strain HAW-EB4) GN=cysI PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.681e-38
Identity = 85/206 (41.26%), Postives = 121/206 (58.74%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EP+YG  +LPRKFK+AV VP DN VD+ TND+G + V+ E  E  GFN+  GGGMG TH   +TFPRL +  GY+  ED L   +A++  QR+ G R++RK SR+KY I   G E F++ +E   G KFEP R +   +     GW +  D      L ++ GR+       ++  LREI + +  + R+T NQN+I+  +  A K
Sbjct:  198 EPVYGQTYLPRKFKMAVAVPPDNDVDVYTNDLGFIAVA-EGDELVGFNMVAGGGMGSTHGEVSTFPRLADDFGYIKAEDSLKFAEAVMTIQRDWGNRENRKLSRLKYTIVKHGFETFKAEIEARTGIKFEPRRDVVIGDRGDRYGWKQGVDDNWHLTLFIEGGRVKDLPGQPLQTGLREIAKIHRGDFRMTSNQNMIIAGVASADK 402          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHESH (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sediminis (strain HAW-EB3) GN=cysI PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.195e-38
Identity = 89/213 (41.78%), Postives = 123/213 (57.75%), Query Frame = 1
Query:   28 DNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDI 654
            D+   T+  D  EPIYG  +LPRKFK+AV VP DN VD+ TND+G++ V+ E GE  GFNL  GGGMG TH    TFPRL +  G++  ED L   +AI+  QR+ G R +RK SR+KY I   G + F++ VE+  G  FEP R +   +     GW +  D      L ++ GRI       ++  LREI + +  + R+T NQN I+  +
Sbjct:  190 DDKVATSEGDEVEPIYGKTYLPRKFKMAVAVPPDNDVDVYTNDLGLIAVAQE-GELVGFNLVAGGGMGSTHGEVETFPRLADDFGFIKAEDTLKFAEAILKVQRDWGNRSNRKQSRLKYTIVKHGYDAFKAEVEKRAGVTFEPKRDVVIGDRGDRYGWIKGVDNRWHLTLFIEGGRIKDLPGQPLQTGLREIAKIHKGDFRMTSNQNFIVAGV 401          
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CYSI_SHEB51.375e-4044.12Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHEB84.000e-4043.63Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHEWM5.224e-4042.25Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHEPW6.823e-4041.10Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHEPA2.593e-3940.64Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
ECM17_YEAST5.776e-3940.19Sulfite reductase [NADPH] subunit beta OS=Saccharo... [more]
CYSI_SHEB25.776e-3943.14Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_CHRSD7.544e-3938.46Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHEHH1.681e-3841.26Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHESH2.195e-3841.78Sulfite reductase [NADPH] hemoprotein beta-compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
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