CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_BACP2 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Bacillus pumilus (strain SAFR-032) GN=cysI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.476e-26
Identity = 68/212 (32.08%), Postives = 112/212 (52.83%), Query Frame = 1
Query:   52 PDSP-EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKR 672
            PD+  EP+YG  +LPRKFK+ V VP  N +D+ + D+G + +  EN +  GFN+ +GGGMG TH    T+P+L + +G+   E ++   K ++  QR+ G R  RK +R KY +   G+E  +  +E   G      R           GW +  +G     + V+ GRI       +   +REI + ++ + R+T NQN+I+ ++    K+
Sbjct:  199 PDTEVEPMYGPLYLPRKFKIGVAVPPANDIDVFSQDLGFIAII-ENEQLIGFNVAIGGGMGMTHGDTATYPQLAKVIGFCTPEQVVEIAKQVITIQRDYGNRSVRKNARFKYTVDRLGLENVKEELEGRLGFALLEARDYHFDHNGDRYGWVKGINGRWHYTMFVEGGRIIDYDDYPLMTGIREIAKIHSGDFRLTANQNLIIGNVTSHKKK 409          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: NIR_SYNE7 (Ferredoxin--nitrite reductase OS=Synechococcus elongatus (strain PCC 7942) GN=nirA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.580e-20
Identity = 69/196 (35.20%), Postives = 100/196 (51.02%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKE-DILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFR-QLPEWEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKA 663
            LPRKF +A+    DNS+    ND+       +     GFN++VGG    T R+    P       +VP +  ++   +AI+   R+NG R +R+ +R+ +LI  WGIE+FR VV + YG        +L +WE +  LG H Q   GL F GLHV  GR+  +    L  + + Y    VR+T  QN+IL  I  A
Sbjct:  180 LPRKFNIAIEGGRDNSIHAEINDLAFTPAYQDG--TLGFNVWVGGFFSST-RVAPAIPLNA----WVPADHSVIRLSRAILEVFRDNGSRGNRQKTRLMWLIDEWGIERFRQVVSEAYGAPLAAAAPELMDWEKRDFLGVHPQKQAGLNFVGLHVPVGRLTTEDLYELARLADTYGQGEVRLTVEQNVILTHIPDA 368          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: NIR_PHOLA (Ferredoxin--nitrite reductase OS=Phormidium laminosum GN=nirA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 57/164 (34.76%), Postives = 80/164 (48.78%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPE--WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKM 570
            LPRKF +A+    DNSV    NDI  V    +     GFN+ VGG      R E   P       +V   D++   +AI++  R  G   +R+ SR+ +LI  WG++KFR+ VEQ  G   +      E  W+ + H+G H Q   GL + GL V  GR+   M
Sbjct:  180 LPRKFNIAIAGCRDNSVHAEINDIAFVPAYKDG--KLGFNVLVGGFFS-AKRCEAAVPLNA----WVDPRDVVALCEAILIVYRITGCGANRQKSRLMWLIDEWGMDKFRAEVEQQLGHPLQTAAPKDEILWDKRDHIGIHAQKKPGLNYVGLLVPVGRLYAPM 336          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: SIR2_MYCPA (Sulfite reductase [ferredoxin] 2 OS=Mycobacterium paratuberculosis GN=sir2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 59/195 (30.26%), Postives = 102/195 (52.31%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKS----HLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDI 654
            LPRK+K A++   D + ++  ND+  + V+     P G +L+VGGG+       +T P L +++G +VP  ++     A+    R+ G R  R  +R+K+L+  WGIEKFR V+E  Y K+  P    P  E  +    H+G     +G    G+    GR++G +   + ++ ++   + +R TP Q ++L DI
Sbjct:  204 LPRKYKTAISGLQDVAHEV--NDVAFIGVNHPEHGP-GLDLWVGGGL-------STNPMLAQRVGAWVPLHEVPEVWAAVTSVFRDYGYRRLRSKARLKFLVKDWGIEKFREVLETEYLKR--PLIDGPAPEPVAHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILLAVADLAQQAGCDRIRFTPYQKLVLLDI 386          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: SIR1_MYCPA (Sulfite reductase [ferredoxin] 1 OS=Mycobacterium paratuberculosis GN=sir1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 58/193 (30.05%), Postives = 100/193 (51.81%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYY--GKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDI 654
            LPRK+K AV+   D S +  T+D+  V V      P G +L+VGGG+       +T P L ++L  +VP +++    +A+    R+ G R  R  +R+K+L+  WGIEKFR ++EQ Y   +  +     P      H+G  +  +G    G+    GR++G     + +++E+   +  R TP Q +++ D+
Sbjct:  204 LPRKYKTAVSGLQDVSHE--THDVAFVGVEHPEHGP-GLDLWVGGGL-------STNPMLAQRLSVWVPLDEVPDVWEAVTQLFRDYGYRRLRAKARLKFLVKDWGIEKFREILEQEYLNRRLIDGPAPAPVKHTIDHVGVQKIKNGLNAVGVAPIAGRVSGTTLSAVADLMEQVGSDRARWTPFQKLVILDV 386          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: NIR_ORYSJ (Ferredoxin--nitrite reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0357100 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 63/198 (31.82%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIR 657
            LPRK+ V V    D       ND+  +      G   GFNL VGG +    R E   P       +VP +DI+   KA++   R+ G R +R+ +RM +LI   G+E FRS VE+         R  PE      W+ + +LG H Q   G+ + GLHV  GR+       L  + ++Y    +R+T  QNI++ +++
Sbjct:  255 LPRKWNVCVIGSHDLYEHPHINDLAYMPAV--KGGKFGFNLLVGGFIS-PKRWEEALPLDA----WVPGDDIIPVCKAVLEAYRDLGTRGNRQKTRMMWLIDELGMEAFRSEVEKRMPNGVLE-RAAPEDLIDKKWQRRDYLGVHPQKQEGMSYVGLHVPVGRVQAADMFELARLADEYGSGELRLTVEQNIVIPNVK 444          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: SIR_MYCTU (Sulfite reductase [ferredoxin] OS=Mycobacterium tuberculosis GN=sir PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 58/196 (29.59%), Postives = 100/196 (51.02%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKK--FEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDIRKA 663
            LPRK+K A++   D + +I  ND+  + V+     P G +L+VGGG+       +T P L +++G +VP  ++     A+    R+ G R  R  +R+K+LI  WGI KFR V+E  Y K+   +     P      H+G     +G    G+    GR++G +   + +++ +   + +R TP Q +++ DI  A
Sbjct:  204 LPRKYKTAISGLQDVAHEI--NDVAFIGVNHPEHGP-GLDLWVGGGL-------STNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDA 389          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: SIR_MYCBO (Sulfite reductase [ferredoxin] OS=Mycobacterium bovis GN=sir PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 58/196 (29.59%), Postives = 100/196 (51.02%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKK--FEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDIRKA 663
            LPRK+K A++   D + +I  ND+  + V+     P G +L+VGGG+       +T P L +++G +VP  ++     A+    R+ G R  R  +R+K+LI  WGI KFR V+E  Y K+   +     P      H+G     +G    G+    GR++G +   + +++ +   + +R TP Q +++ DI  A
Sbjct:  204 LPRKYKTAISGLQDVAHEI--NDVAFIGVNHPEHGP-GLDLWVGGGL-------STNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDA 389          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: NIR_BETVE (Ferredoxin--nitrite reductase, chloroplastic OS=Betula verrucosa GN=NIR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 64/201 (31.84%), Postives = 93/201 (46.27%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRS-VVEQYYGKKFEPFRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKA 663
            LPRK+ V V    D       ND+  +    +     GFNL VGG        E           +V  +DI+   KAI+   R+ G R +R+ +RM +LI   GIE FRS VV++   ++ E  R  PE      WE +  +G H Q   GL + GLH+  GR+       L  + + Y    +R+T  QNII+ +I  +
Sbjct:  241 LPRKWNVCVVGSHDLFEHPHINDLAYMPAIKDGRF--GFNLLVGGFFSPRRCAEAV-----PLDAWVSADDIILVCKAILEAYRDLGTRGNRQKTRMMWLIDELGIEGFRSEVVKRMPNQELE--RAAPEDLIEKQWERRELIGVHPQKQEGLSYVGLHIPVGRVQADDMDELARLADTYGCGELRLTVEQNIIIPNIENS 432          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: NIR_ARATH (Ferredoxin--nitrite reductase, chloroplastic OS=Arabidopsis thaliana GN=NIR1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 62/196 (31.63%), Postives = 93/196 (47.45%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYY--GKKFEPFRQ---LPEWEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDI 654
            LPRK+ V V    D       ND+  +  + +     GFNL VGG      R E   P       +VP +D+L   KA++   R+ G R +R+ +RM +LI   G+E FR+ VE+    GK      +     +WE + + G + Q   GL F GLHV  GR+       L  + + Y    +R+T  QNII+ ++
Sbjct:  244 LPRKWNVCVVGTHDLYEHPHINDLAYMPANKDGRF--GFNLLVGGFFS-PKRCEEAIPLDA----WVPADDVLPLCKAVLEAYRDLGTRGNRQKTRMMWLIDELGVEGFRTEVEKRMPNGKLERGSSEDLVNKQWERRDYFGVNPQKQEGLSFVGLHVPVGRLQADDMDELARLADTYGSGELRLTVEQNIIIPNV 432          
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CYSI_BACP21.476e-2632.08Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
NIR_SYNE71.580e-2035.20Ferredoxin--nitrite reductase OS=Synechococcus elo... [more]
NIR_PHOLA1.296e-1434.76Ferredoxin--nitrite reductase OS=Phormidium lamino... [more]
SIR2_MYCPA6.431e-1430.26Sulfite reductase [ferredoxin] 2 OS=Mycobacterium ... [more]
SIR1_MYCPA1.433e-1330.05Sulfite reductase [ferredoxin] 1 OS=Mycobacterium ... [more]
NIR_ORYSJ4.168e-1331.82Ferredoxin--nitrite reductase, chloroplastic OS=Or... [more]
SIR_MYCTU7.110e-1329.59Sulfite reductase [ferredoxin] OS=Mycobacterium tu... [more]
SIR_MYCBO7.110e-1329.59Sulfite reductase [ferredoxin] OS=Mycobacterium bo... [more]
NIR_BETVE2.702e-1231.84Ferredoxin--nitrite reductase, chloroplastic OS=Be... [more]
NIR_ARATH4.609e-1231.63Ferredoxin--nitrite reductase, chloroplastic OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
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