CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188918_ssr162 microsatellite CN188918_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8214 contig Csv1_Contig8214:183..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: NIR_MAIZE (Ferredoxin--nitrite reductase, chloroplastic (Fragment) OS=Zea mays GN=NIR PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 66/200 (33.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL---GYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDI 654
            LPRK+ V V    D       ND+  +    ++GE  GFNL VGG +           R  E L    +V  +D++   KAI+   R+ G R +R+ +RM +LI   G+E FRS VE+         R  PE      WE + +LG H Q   GL + GLHV  GR+       L  + ++Y    +R+T  QNI+L ++
Sbjct:  226 LPRKWNVCVIGSHDLYEHPHINDLAYMPAV-KDGE-FGFNLLVGGFISPK--------RWAEALPLDAWVAGDDVVPVCKAILEAYRDLGSRGNRQKTRMMWLIDELGMEVFRSEVEKRMPNGVLE-RAAPEDLVDKRWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMFELARLADEYGTGELRLTVEQNIVLPNV 414          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: NIR_SPIOL (Ferredoxin--nitrite reductase, chloroplastic OS=Spinacia oleracea GN=NIR PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 63/199 (31.66%), Postives = 93/199 (46.73%), Query Frame = 1
Query:   88 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVV-----EQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKA 663
            LPRK+   V    D       ND+  +  + +NG+  GFNL VGG      R E   P       +V  ED++   KA++   R+ G R +R+  RM +LI   G+E FR  V     EQ   +         +WE + +LG H Q   GL F GLH+  GR+     + L  I + Y    +R+T  QNII+ ++  +
Sbjct:  253 LPRKWNPCVIGSHDLYEHPHINDLAYMPAT-KNGK-FGFNLLVGGFFS-IKRCEEAIPLDA----WVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENS 444          
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
NIR_MAIZE6.019e-1233.00Ferredoxin--nitrite reductase, chloroplastic (Frag... [more]
NIR_SPIOL7.861e-1231.66Ferredoxin--nitrite reductase, chloroplastic OS=Sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
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