CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188918_ssr162 microsatellite CN188918_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8214 contig Csv1_Contig8214:183..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: ECM17_SCHPO (Sulfite reductase [NADPH] subunit beta OS=Schizosaccharomyces pombe GN=ecm17 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.341e-38
Identity = 87/220 (39.55%), Postives = 129/220 (58.64%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSH---LGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREI-----IEKYNLNVRITPNQNIILCDIRK---AWKRPH 678
            EP+YG  +LPRKFKV V  P  N VD+ TND+ ++ +  EN +  GFN+ +GGGMG TH  + T+PRL   +GYV  + I+  VKAI++ QR+NG R++RK++R+KY + + G+  F   VE+  G KFE  R  P++  K+H    GWH+      +  + V+NGRI      + K  LRE+      EK     R+T NQ++IL ++ +    W   H
Sbjct: 1090 EPLYGPTYLPRKFKVGVAAPPYNDVDVYTNDVALIAII-ENDKVLGFNVGIGGGMGTTHNNKKTYPRLATVVGYVLTDKIMEVVKAILIVQRDNGDRENRKHARLKYTVDTLGVSTFVEKVEEVLGYKFEEARDHPQF-IKNHDDFEGWHKTEKNKYWRSIFVENGRIENNGILQFKTGLRELAERLYTEKSEAEFRLTANQHVILFNVAENELGWINEH 1307          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_LEPBP (Sulfite reductase [NADPH] hemoprotein beta-component OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=cysI PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.341e-38
Identity = 81/201 (40.30%), Postives = 117/201 (58.21%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPNQNIILCDI 654
            +P+Y   +LPRKFK+A+ +P  N VD+ TNDIG++ +  ENG+  GFN+ VGGG+G TH    T+PR+G   G++PK+DIL  V  IV  QR+ G R+DRK SR+KY +   G+E ++  VE+  G  FE  +           GW +   G     + V+NGR+  +    +K  L E+ +      R T NQN+IL DI
Sbjct:  197 DPLYKDVYLPRKFKIAIAIPPYNDVDLFTNDIGLIAII-ENGQLLGFNVAVGGGLGTTHGNPDTYPRVGTVFGFIPKKDILRVVYEIVTVQRDFGNREDRKLSRLKYTLDRLGVEFYKREVEKRAGISFESAKDFQFTTRSDDFGWKQDAAGNWHYTVFVENGRVCDEHGYNLKTALLEVSKTRRATFRFTCNQNLILSDI 396          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_LEPBA (Sulfite reductase [NADPH] hemoprotein beta-component OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=cysI PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.341e-38
Identity = 81/201 (40.30%), Postives = 117/201 (58.21%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPNQNIILCDI 654
            +P+Y   +LPRKFK+A+ +P  N VD+ TNDIG++ +  ENG+  GFN+ VGGG+G TH    T+PR+G   G++PK+DIL  V  IV  QR+ G R+DRK SR+KY +   G+E ++  VE+  G  FE  +           GW +   G     + V+NGR+  +    +K  L E+ +      R T NQN+IL DI
Sbjct:  197 DPLYKDVYLPRKFKIAIAIPPYNDVDLFTNDIGLIAII-ENGQLLGFNVAVGGGLGTTHGNPDTYPRVGTVFGFIPKKDILRVVYEIVTVQRDFGNREDRKLSRLKYTLDRLGVEFYKREVEKRAGISFESAKDFQFTTRSDDFGWKQDAAGNWHYTVFVENGRVCDEHGYNLKTALLEVSKTRRATFRFTCNQNLILSDI 396          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_NEIMF (Sulfite reductase [NADPH] hemoprotein beta-component OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=cysI PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.139e-37
Identity = 86/221 (38.91%), Postives = 123/221 (55.66%), Query Frame = 1
Query:   46 NFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTL----REIIEKYNLNVRITPNQNIILCDIRKAWKRPHHYSSRT 696
            +F    EPI G  +LPRKFK AV +P  N VD   ND+  V VSD NG+  GFN+  GGG+   H    T+P +  +LG+VP E  L A +A+V TQR+ G R DRK +R +Y I + G++ FR+ VE+  G  FEP R          +GW +  DG     L +++GR+  +  K L     EI + +  + RIT NQN+I+ ++ +A K      +RT
Sbjct:  205 DFLQEDEPILGKTYLPRKFKTAVVIPPLNDVDCYGNDLDFVAVSDGNGQLAGFNVLAGGGLSMEHGNTKTYPNISLELGFVPPEHALKAAEAVVTTQRDFGNRSDRKNARTRYTIQNMGLDNFRAEVERRMGMPFEPIRPFKFTGRGDRIGWVKGIDGNWHLTLFIESGRLVDEGGKQLLTGVLEIAKIHKGDFRITANQNLIVANVAEADKAKIEELART 425          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_NEIMB (Sulfite reductase [NADPH] hemoprotein beta-component OS=Neisseria meningitidis serogroup B GN=cysI1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 86/221 (38.91%), Postives = 123/221 (55.66%), Query Frame = 1
Query:   46 NFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTL----REIIEKYNLNVRITPNQNIILCDIRKAWKRPHHYSSRT 696
            +F    EPI G  +LPRKFK AV +P  N VD   ND+  V VSD NG+  GFN+  GGG+   H    T+P +  +LG+VP E  L A +A+V TQR+ G R DRK +R +Y I + G++ FR+ VE+  G  FEP R          +GW +  DG     L +++GR+  +  K L     EI + +  + RIT NQN+I+ ++ +A K      +RT
Sbjct:  205 DFLQEDEPILGKTYLPRKFKTAVVIPPLNDVDCYGNDLDFVAVSDGNGQLAGFNVLAGGGLSMEHGNTKTYPNISLELGFVPPEHALKAAEAVVTTQRDFGNRSDRKNARTRYTIQNMGLDNFRAEVERRMGMPFEPVRPFKFTGRGDRIGWVKGIDGNWHLTLFIESGRLVDEGGKQLLTGVLEIAKIHKGDFRITANQNLIVANVAEADKAKIEEFART 425          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_NEIM0 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Neisseria meningitidis serogroup C (strain 053442) GN=cysI PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.406e-37
Identity = 85/221 (38.46%), Postives = 123/221 (55.66%), Query Frame = 1
Query:   46 NFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTL----REIIEKYNLNVRITPNQNIILCDIRKAWKRPHHYSSRT 696
            +F    EPI G  +LPRKFK AV +P  N VD   ND+  V +SD NG+  GFN+  GGG+   H    T+P +  +LG+VP E  L A +A+V TQR+ G R DRK +R +Y I + G++ FR+ VE+  G  FEP R          +GW +  DG     L +++GR+  +  K L     EI + +  + RIT NQN+I+ ++ +A K      +RT
Sbjct:  205 DFLQEDEPILGKTYLPRKFKTAVVIPPLNDVDCYGNDLDFVAISDGNGQLAGFNVLAGGGLSMEHGNTKTYPNISLELGFVPPEHALKAAEAVVTTQRDFGNRSDRKNARTRYTIQNMGLDNFRAEVERRMGMPFEPIRPFKFTGRGDRIGWVKGIDGNWHLTLFIESGRLVDEGGKQLLTGVLEIAKIHKGDFRITANQNLIVANVAEADKAKIEELART 425          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_METPB (Sulfite reductase [NADPH] hemoprotein beta-component OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=cysI PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 82/205 (40.00%), Postives = 116/205 (56.59%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI-----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKA 663
            EP+YG  +LPRKFK  V VP  N VDI  +D+G + + D+     G+N+ VGGGMG TH    TFPR  + LG+V  ED L A +A++  QR+ G R +RK +R+KY I  +G++ FR+ VE+  GKK E  +           GW E  DG     L+V +GRI       +    LR I E +  + R+T NQN+I+ ++  A
Sbjct:  237 EPVYGKTYLPRKFKTVVAVPPSNEVDIFAHDLGFIAILDKKNRVTGWNVTVGGGMGMTHGETDTFPRTADVLGFVKPEDALKAAEAVMTVQRDWGNRKNRKNARLKYTIERFGLDAFRAEVEKRIGKKLEAPKPFTFENNGDRYGWVEGEDGRHHLTLYVPSGRIKDIDGGPQFLSGLRRIAEVHEGDFRLTGNQNVIIANVPAA 441          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHEFN (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella frigidimarina (strain NCIMB 400) GN=cysI PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.054e-36
Identity = 84/204 (41.18%), Postives = 120/204 (58.82%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT----LREIIEKYNLNVRITPNQNIILCDI 654
            ++ EP+YG  +LPRKFK+AV VP  N VD+ TND+G + VS E GE  GFNL  GGGMG TH    TFPRL +  G++  +D+    +A++  QR+ G R  RK +R+KY I   G + F++ VE+  G KFEP R +   +     GW E  D      L +++GRI     +T    LREI + +  + R+T NQN+I+  +
Sbjct:  193 ETVEPVYGKTYLPRKFKMAVAVPPHNDVDVYTNDLGFIAVS-EAGELIGFNLVAGGGMGSTHGEVETFPRLADDFGFIKTDDVTKFAEAVMTVQRDWGNRVVRKRARLKYTIVDHGYDAFKAEVEKRAGVKFEPKRDVIIGDRGDRYGWVEGIDNKFHLTLFIESGRIKDMPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGV 395          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_NEIMA (Sulfite reductase [NADPH] hemoprotein beta-component OS=Neisseria meningitidis serogroup A GN=cysI PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.054e-36
Identity = 82/212 (38.68%), Postives = 119/212 (56.13%), Query Frame = 1
Query:   46 NFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTL----REIIEKYNLNVRITPNQNIILCDIRKAWK 669
            +F    EPI G  +LPRKFK AV +P  N VD   ND+  V +SD NG+  GFN+  GGG+   H    T+P +  +LG+VP E  L A +A+V TQR+ G R DRK +R +Y I + G++ FR+ VE+  G  FEP R          +GW +  DG     L +++GR+  +  K L     EI + +  + RIT NQN+I+ ++ +  K
Sbjct:  205 DFLQEDEPILGKTYLPRKFKTAVVIPPLNDVDCYGNDLDFVAISDGNGQLAGFNVLAGGGLSMEHGNTKTYPNISLELGFVPPEHALKAAEAVVTTQRDFGNRSDRKNARTRYTIQNMGLDNFRAEVERRMGMPFEPIRPFKFTGRGDRIGWVKGIDGNWHLTLFIESGRLVDEGGKQLLTGVLEIAKIHKGDFRITANQNLIVANVPEGGK 416          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_METSB (Sulfite reductase [NADPH] hemoprotein beta-component OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=cysI PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 80/204 (39.22%), Postives = 123/204 (60.29%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSH---LGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPNQNIILCDI 654
            EP  G Q+LPRKFK+ + +P  N +D+ T D+G + ++ ENG   G+N+ +GGGMGRT +   T+PRLG+ +G++PKE IL A  A+V TQR+ G R  R ++R KY I + G++  +  +E+  G   EP R    +EF S+    GW +  +G     L ++NGRI  +    +   LR I   +  + R+TPNQN+++ DI
Sbjct:  211 EPFLGKQYLPRKFKIGLVIPPYNDIDVYTQDLGFIAIA-ENGRLIGYNIVIGGGMGRTDQAPETYPRLGDVIGFIPKEQILAATDAVVGTQRDFGDRTVRAHARFKYTIDTHGLDFIQGEIERRLGYALEPAR---PFEFVSNGDAYGWAKGENGRYHYTLFIENGRIVNREDVALLDGLRAIAAVHQGSFRMTPNQNVVIADI 410          
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
ECM17_SCHPO8.341e-3839.55Sulfite reductase [NADPH] subunit beta OS=Schizosa... [more]
CYSI_LEPBP8.341e-3840.30Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_LEPBA8.341e-3840.30Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_NEIMF4.139e-3738.91Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_NEIMB5.406e-3738.91Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_NEIM05.406e-3738.46Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_METPB1.573e-3640.00Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHEFN2.054e-3641.18Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_NEIMA2.054e-3638.68Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_METSB2.683e-3639.22Sulfite reductase [NADPH] hemoprotein beta-compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
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