CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188918_ssr162 microsatellite CN188918_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8214 contig Csv1_Contig8214:183..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI2_KLEP3 (Sulfite reductase [NADPH] hemoprotein beta-component 2 OS=Klebsiella pneumoniae (strain 342) GN=cysI2 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.966e-35
Identity = 80/201 (39.80%), Postives = 113/201 (56.22%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPNQNIILCDI 654
            EPI G  +LPRKFK AV +P  N VD+  ND+  + + D NG+  GFN+ VGGG+  TH  ++T+PRL  +LGY+P    L    A+V TQR+ G R +R+ ++ KY I   GIE F++ VE   G  F+P R          +GW E  DG     L + +GR+  K    +K  L  I   +  + R+TPNQNII+  +
Sbjct:  195 EPILGNNYLPRKFKTAVVIPPQNDVDLHANDLNFIAIGD-NGQLTGFNVLVGGGLAMTHGDQSTYPRLATELGYIPLNATLAVATAVVATQRDLGNRANRRNAKTKYTIDRLGIEVFKAEVELRAGLAFQPLRPYAFSSRGDRIGWVEGIDGKHHLTLFIPSGRLIDKPGKPLKSGLAAIAAVHTGDFRLTPNQNIIIAGV 394          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_STAS1 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=cysI PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.874e-35
Identity = 75/204 (36.76%), Postives = 117/204 (57.35%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDI 654
            + PEPIYG  +LPRKFK+ + VP  N +D+ + DIG++ +  EN +  GFN+ VGGGMG  H    T+P++G  +GY+PKE+++   + I+  QR+ G R++R  +R KY +   G++  R+ +    G + E  R           GW E G G     L V NGR+      K+K  LR I E +  + R+TPNQN+++ ++
Sbjct:  200 EEPEPIYGKTYLPRKFKIGIAVPPSNDIDVYSQDIGLIAIL-ENEQLVGFNVAVGGGMGMKHGNTATYPQVGRLIGYIPKEEVVDVCEKILTVQRDYGNREERTNARFKYTVDRLGVDWIRNEINNRLGWQLENKRPYHFEHNGDRYGWTE-GSGKWHYTLFVQNGRVKDTEDYKLKTALRTIAEVHTGDFRLTPNQNLVIANV 401          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_NITOC (Sulfite reductase [NADPH] hemoprotein beta-component OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=cysI PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.472e-34
Identity = 77/210 (36.67%), Postives = 120/210 (57.14%), Query Frame = 1
Query:   52 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT----LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            P++ EPIYG  +LPRKFK+ +T+P +N +D+ + D+G++ ++ +     GFN+ VGGGMG TH   +T+PRLG+ +G+     +L   + I+  QR+ G R DRK +R+KY I S  I+ F++ + Q  G   EP R         H GW E   G     L + +GRI   + +     LREI + +  + R+T NQN+ + +I K  K
Sbjct:  198 PENEEPIYGETYLPRKFKIGITIPPNNEIDVFSQDLGLIAIA-KGSRLVGFNICVGGGMGMTHSEPSTYPRLGDVIGFCTPSQLLEVAENILKIQRDFGNRCDRKQARLKYTIDSRSIDWFKAELNQRLGWDLEPARPFHFESNGDHFGWVEDSKGRWHLTLFLLSGRIKDTLDQPLMTGLREIAKIHKGDFRLTTNQNLTIANISKTNK 406          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ACTP2 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=cysI PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.923e-34
Identity = 77/201 (38.31%), Postives = 115/201 (57.21%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLR----EIIEKYNLNVRITPNQNIILCDI 654
            EPI G  +LPRKFK AV +P  N VD+  ND+  + + DENG+  GFN+ VGGG+   H    T+P +   LG+VP E  L A + +V TQR+ G R DRK +R++Y + +  ++ FR+ VE+    KFEP R     E    +GW +  D      L +++ RI  K +K L     E+ + +  + RIT NQN+I+ ++
Sbjct:  211 EPILGKTYLPRKFKTAVAIPPLNDVDVYANDLNFIAIQDENGQLCGFNVLVGGGLSFEHGNTKTYPNVAYSLGFVPLEHTLAAAEGVVKTQRDFGNRSDRKNARVRYTVQNMTLDGFRAEVERCMNIKFEPTRPYEFTERGDRIGWVKGIDNNWHLTLFIESVRITDKPEKPLMTGVLELAKVHKGDFRITANQNLIVANV 411          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_VIBHB (Sulfite reductase [NADPH] hemoprotein beta-component OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=cysI PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.280e-34
Identity = 81/209 (38.76%), Postives = 119/209 (56.94%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            +  EPI G  +LPRKFK  V +P  N VD+  ND+  V ++D NG+  GFN+ VGGG+  TH   +T+PR  +  G++P E  L    A+V TQR+ G R +RK ++ KY +   G + F++ VE+  G KFE  R     E    +GW E  DG     L ++NGR+    GK  KT + EI + +  + R+T NQN+I+  + K+ K
Sbjct:  207 EEDEPILGKNYLPRKFKTTVVIPPQNDVDVHANDLNFVAIAD-NGKLVGFNVLVGGGLAMTHCDTSTYPRRADDFGFIPLEKTLDVAAAVVTTQRDWGNRSNRKNAKTKYTLDRVGSDVFKAEVEKRAGVKFEQSRPYEFTERGDRIGWVEGIDGKHHLALFIENGRLLDFPGKPLKTGVAEIAKIHKGDFRMTANQNLIVAGVPKSQK 414          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_MANSM (Sulfite reductase [NADPH] hemoprotein beta-component OS=Mannheimia succiniciproducens (strain MBEL55E) GN=cysI PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.280e-34
Identity = 80/208 (38.46%), Postives = 121/208 (58.17%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDEN-GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKR 672
            EPI G ++LPRK+K AV +P  N VD+ +ND+  V + DE  G+  GFN+ VGGG+   H    T+P +  +LGYVP ED L A ++IV TQR+ G R DRK +R++Y I +  +E FR  VE+  G++FE  R     E    +GW +  D        +++GR+  K    +   + E+ + +  + RIT NQNII+ ++ +  KR
Sbjct:  211 EPILGNRYLPRKYKTAVVLPPLNDVDLYSNDMNFVGIKDEKTGKLAGFNVLVGGGLSFEHGNTKTYPNIALELGYVPVEDTLKAAESIVTTQRDFGNRADRKNARLRYTIQNMTLEGFREEVERRMGRRFEAIRPFEFTERGDRIGWVKGIDKKWHLTCFIESGRLVDKPDLPLMTGMLELAKVHKGDFRITANQNIIIANVAEEDKR 418          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_PAESJ (Sulfite reductase [NADPH] hemoprotein beta-component OS=Paenibacillus sp. (strain JDR-2) GN=cysI PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.284e-34
Identity = 72/201 (35.82%), Postives = 113/201 (56.22%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIA----GKMKKTLREIIEKYNLNVRITPNQNIILCDI 654
            EPIYG  +LPRKFK+ + VP  N VD+ + D+G + +  E+G+  GFN+ VGGGMG TH    T+P+L + +G+V  + +L   + +V  QR+ G R  RKY+R KY I   G+  F   ++   G +  P R+          GW +  DG     L+V  GR+      K++  LREI + +  + R+T NQN+++ ++
Sbjct:  206 EPIYGPVYLPRKFKIGIAVPPSNDVDVYSQDLGYIAILGEDGKLAGFNVCVGGGMGMTHGDTATYPQLAKVIGFVTPDQVLDLAEKVVTIQRDYGNRSVRKYARFKYTIDRHGLPWFMDELQDRLGWELAPAREFHFEHTGDRYGWIKGKDGKWNLNLYVQAGRVVDTEDNKLRSALREIAKIHTGDFRLTANQNLVIANV 406          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_VIBVY (Sulfite reductase [NADPH] hemoprotein beta-component OS=Vibrio vulnificus (strain YJ016) GN=cysI PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.595e-34
Identity = 82/209 (39.23%), Postives = 119/209 (56.94%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            +  EPI G  +LPRKFK  V +P  N VD+  ND+  V ++ ENG+  GFN+ VGGG+  TH   +T+PR  +  GY+P E  L    A+V TQR+ G R +RK ++ KY +   G + F++ VE+  G KFE  R     E    +GW E  DG     L ++NGR+    GK  KT + EI + +  + R+T NQN+I+  + K+ K
Sbjct:  207 EDDEPILGKTYLPRKFKTTVVIPPQNDVDVHANDLNFVAIA-ENGKLIGFNVLVGGGLAMTHGDTSTYPRRADDFGYIPLEKTLDVAAAVVTTQRDWGNRSNRKNAKTKYTLDRVGTDVFKAEVEKRAGIKFEVSRPYEFTERGDRIGWVEGIDGKHHLTLFIENGRLLDYPGKPLKTGVAEIAKIHKGDFRMTANQNLIVAGVSKSNK 414          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_VIBPA (Sulfite reductase [NADPH] hemoprotein beta-component OS=Vibrio parahaemolyticus GN=cysI PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.595e-34
Identity = 80/209 (38.28%), Postives = 119/209 (56.94%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            +  EPI G  +LPRKFK  V +P  N VD+  ND+  V ++D NG+  GFN+ VGGG+  TH   +T+PR  +  G++P E  L    A+V TQR+ G R +RK ++ KY +   G + F++ VE+  G +FE  R     E    +GW E  DG     L ++NGR+    GK  KT + EI + +  + R+T NQN+I+  + K+ K
Sbjct:  207 EEDEPILGKTYLPRKFKTTVVIPPQNDVDVHANDLNFVAIAD-NGKLVGFNVLVGGGLAMTHGDTSTYPRRADDFGFIPLEKTLDVAAAVVTTQRDWGNRSNRKNAKTKYTLDRVGTDVFKAEVEKRAGIQFEASRPYEFTERGDRIGWVEGIDGKFHLALFIENGRLLDYPGKPLKTGVAEIAKIHKGDFRMTANQNLIVAGVPKSEK 414          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_VIBCM (Sulfite reductase [NADPH] hemoprotein beta-component OS=Vibrio cholerae serotype O1 (strain M66-2) GN=cysI PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 84/213 (39.44%), Postives = 121/213 (56.81%), Query Frame = 1
Query:   52 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWKRPH 678
            PD  EPI G+ +LPRKFK  V +P  N VD+  ND+  V +  ENG+  GFN+ VGGG+  TH   +T+PR  +  G++P E  L    A+V TQR+ G R +RK ++ KY +   G+E F++ VE+  G  F P R          +GW E  DG     L ++NGRI    GK  KT + EI + +  + R+T NQN+I+  +  A ++PH
Sbjct:  206 PDE-EPILGSNYLPRKFKTTVVIPPHNDVDVHANDLNFVAIG-ENGQLVGFNVLVGGGLAMTHGDTSTYPRRADDFGFIPLEKTLEVAAAVVSTQRDWGNRSNRKNAKTKYTLDRVGVEVFKAEVEKRAGITFAPSRAYEFTSRGDRIGWVEGIDGKHHLTLFIENGRILDFPGKPLKTGVAEIAKVHQGDFRMTANQNLIVAGV-PADQKPH 415          
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CYSI2_KLEP32.966e-3539.80Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_STAS13.874e-3536.76Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_NITOC1.472e-3436.67Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ACTP21.923e-3438.31Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_VIBHB3.280e-3438.76Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_MANSM3.280e-3438.46Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_PAESJ4.284e-3435.82Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_VIBVY5.595e-3439.23Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_VIBPA5.595e-3438.28Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_VIBCM7.307e-3439.44Sulfite reductase [NADPH] hemoprotein beta-compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
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