CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_VIBCH (Sulfite reductase [NADPH] hemoprotein beta-component OS=Vibrio cholerae GN=cysI PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 84/213 (39.44%), Postives = 121/213 (56.81%), Query Frame = 1
Query:   52 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWKRPH 678
            PD  EPI G+ +LPRKFK  V +P  N VD+  ND+  V +  ENG+  GFN+ VGGG+  TH   +T+PR  +  G++P E  L    A+V TQR+ G R +RK ++ KY +   G+E F++ VE+  G  F P R          +GW E  DG     L ++NGRI    GK  KT + EI + +  + R+T NQN+I+  +  A ++PH
Sbjct:  206 PDE-EPILGSNYLPRKFKTTVVIPPHNDVDVHANDLNFVAIG-ENGQLVGFNVLVGGGLAMTHGDTSTYPRRADDFGFIPLEKTLEVAAAVVSTQRDWGNRSNRKNAKTKYTLDRVGVEVFKAEVEKRAGITFAPSRAYEFTSRGDRIGWVEGIDGKHHLTLFIENGRILDFPGKPLKTGVAEIAKVHQGDFRMTANQNLIVAGV-PADQKPH 415          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SODGM (Sulfite reductase [NADPH] hemoprotein beta-component OS=Sodalis glossinidius (strain morsitans) GN=cysI PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLR----EIIEKYNLNVRITPNQNIILCDIRK 660
            EPI G  +LPRKFK  V VP  N VD+  ND+  V +SD NG+  GFN+ VGGG+  TH  ++T+PR   + G++  +D L   +A+V TQR+ G R +RK ++ KY + S G+  FR  VE   G +F P R     E     GW +  D      L ++NGRI     +TL+    EI  ++  + R+T NQN+I+  + K
Sbjct:  199 EPILGPTYLPRKFKTTVVVPPLNDVDLHANDLNFVAISD-NGQLVGFNVLVGGGLAMTHGDKSTYPRKASEFGFIALDDTLKIAEAVVTTQRDWGNRSNRKNAKTKYTLESEGVGAFREEVEVRAGVQFAPIRPYAFTERGDRFGWVKGIDNQWHLTLFIENGRILDYPDRTLKTGLAEIARRHKGDFRLTANQNLIIAGVDK 400          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_METNO (Sulfite reductase [NADPH] hemoprotein beta-component OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=cysI PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 80/211 (37.91%), Postives = 121/211 (57.35%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFE---PFRQLPEWEFKSH---LGWHEQGDGGLFCGLHVDNGRI-----AGKMKKTLREIIEKYNLNVRITPNQNIILCDI 654
            ++ EPIYG  +LPRKFK+ V VP  N VDI  +D+G + + D+  + +G+N+ VGGGMG TH    TFPR  + + +   ED L   +A++  QR+ G R  RK +R+KY I  +G+  FR+ VE+  G+K +   PFR      F+S+    GW E  DG     L++ +GRI       +    LR I E +  + R+T NQN+I+ ++
Sbjct:  223 EAVEPIYGKTYLPRKFKIVVAVPPSNEVDIFAHDLGFIAILDKKNKLKGWNVTVGGGMGMTHGETDTFPRTADVMAFCEPEDALKVAEAVMTVQRDWGNRKSRKNARLKYTIERYGLAAFRAEVERRVGRKLQDPKPFR------FESNGDRYGWVEGEDGRHHLTLYLPSGRIKDVEGGPRYLSGLRRIAEVHQGDFRLTGNQNVIVANV 427          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECOLI (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli (strain K12) GN=cysI PE=1 SV=4)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    A  +K  L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECOBW (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli (strain K12 / BW2952) GN=cysI PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    A  +K  L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECOBR (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli (strain B / REL606) GN=cysI PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    A  +K  L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECOBB (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli (strain B / BL21) GN=cysI PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    A  +K  L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_COLP3 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=cysI PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 79/213 (37.09%), Postives = 117/213 (54.93%), Query Frame = 1
Query:   43 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---------AGKMKKTLREIIEKYNLNVRITPNQNIILCDI 654
            T   D  EPI G+ +LPRKFK  V +P +N +D+  ND+  V +S E GE  GFN+ VGGG+  TH  + T+PR  +  G++PKE  L    A+V TQR+ G R +RK ++ KY +   G++ F++ VE+  G KF   R           GW E  DG     L ++NGRI         +  +K  +REI + +  + R+T NQN+I+  +
Sbjct:  204 TTEADEIEPILGSNYLPRKFKTTVVIPPNNDIDVHANDLNFVAIS-EGGELIGFNVLVGGGLAMTHGDKATYPRCADDFGFIPKEHTLAIAAAVVTTQRDWGNRVNRKNAKTKYTLDRVGVDTFKAEVERRAGIKFSESRSYEFTHRGDSFGWVEGIDGKNHLTLFIENGRILDFNGANSDSKALKTGMREIAKIHKGDFRLTANQNLIVAGV 415          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALPK (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella paratyphi A (strain AKU_12601) GN=cysI PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 80/206 (38.83%), Postives = 117/206 (56.80%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+ +V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G++ F+  VE+  G KFEP R          +GW +  D      L ++NGRI   +G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNLVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYSGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALPA (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella paratyphi A GN=cysI PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 80/206 (38.83%), Postives = 117/206 (56.80%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+ +V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G++ F+  VE+  G KFEP R          +GW +  D      L ++NGRI   +G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNLVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYSGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CYSI_VIBCH7.307e-3439.44Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SODGM7.307e-3438.92Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_METNO7.307e-3437.91Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECOLI7.307e-3438.83Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECOBW7.307e-3438.83Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECOBR7.307e-3438.83Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECOBB7.307e-3438.83Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_COLP37.307e-3437.09Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALPK9.543e-3438.83Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALPA9.543e-3438.83Sulfite reductase [NADPH] hemoprotein beta-compone... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
back to top