CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188918_ssr162 microsatellite CN188918_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8214 contig Csv1_Contig8214:183..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_METS4 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Methylobacterium sp. (strain 4-46) GN=cysI PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 78/208 (37.50%), Postives = 117/208 (56.25%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSH---LGWHEQGDGGLFCGLHVDNGRI-----AGKMKKTLREIIEKYNLNVRITPNQNIILCDI 654
            ++ EP+YG  +LPRKFK  V VP  N VD+  +D+G + + D+    +G+N+ VGGGMG TH    TFPR  + LG+    D L   +A++  QR+ G R  RK +R+KY I  +G+  FR+ VE+  GK   P R+   ++F  +    GW E  DG     L+V +GRI       +    LR I E +  + R+T NQN+I+ ++
Sbjct:  223 EAAEPVYGRTYLPRKFKTVVAVPPSNEVDVFAHDLGFIAILDKKNALKGWNVTVGGGMGMTHGEPDTFPRTADLLGFCEPADALKVAEAVMTVQRDWGNRKSRKNARLKYTIERYGLAAFRAEVERRVGK---PLREPKPFQFTGNGDRYGWVEGEDGRHHLTLYVPSGRIRDVEGGPRYLSGLRRIAEIHEGDFRLTGNQNVIVANV 427          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_TOLAT (Sulfite reductase [NADPH] hemoprotein beta-component OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=cysI PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 82/207 (39.61%), Postives = 120/207 (57.97%), Query Frame = 1
Query:   52 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRK 660
            PD  EPI G+ +LPRKFK  V +P  N +D+  ND+  V ++ E+G+  GFN+ VGGG+  TH  + TFPR  +  G++ KED L   +A+V TQR+ G R +R+ ++ KY +   G++ F++ VE+  G KFE  R           GW E  DG     L ++NGRI    GK  KT L EI + +  + R+T NQN+I+  + K
Sbjct:  191 PDE-EPILGSTYLPRKFKTTVVIPPHNDIDVHANDLNFVAIA-EDGKLVGFNVLVGGGLAMTHGNKETFPRKADDFGFIRKEDTLKFAEAVVTTQRDWGNRVNRQNAKTKYTLERVGVDAFKAEVEKRTGIKFEESRPYVFTSRGDRFGWVEGIDGKQHLTLFIENGRILDFPGKPLKTGLAEIAKIHKGDFRMTANQNLIIAGVPK 395          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALSV (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella schwarzengrund (strain CVM19633) GN=cysI PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALPB (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=cysI PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALHS (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella heidelberg (strain SL476) GN=cysI PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALG2 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=cysI PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALEP (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella enteritidis PT4 (strain P125109) GN=cysI PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALDC (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella dublin (strain CT_02021853) GN=cysI PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHIFL (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shigella flexneri GN=cysI PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHIDS (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARAASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408          
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CYSI_METS49.543e-3437.50Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_TOLAT1.246e-3339.61Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALSV1.246e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALPB1.246e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALHS1.246e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALG21.246e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALEP1.246e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALDC1.246e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHIFL1.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHIDS1.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
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