CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188918_ssr162 microsatellite CN188918_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8214 contig Csv1_Contig8214:183..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECO8A (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli O8 (strain IAI1) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECO81 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli O81 (strain ED1a) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECO5E (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECO57 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli O157:H7 GN=cysI PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECO55 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli (strain 55989 / EAEC) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECO45 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECO27 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECO24 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_CITK8 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 82/206 (39.81%), Postives = 116/206 (56.31%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V V+ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAVA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGEFRITANQNLIIAGVPESQK 408
[Close]
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_BAUCH (Sulfite reductase [NADPH] hemoprotein beta-component OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=cysI PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.628e-33
Identity = 78/206 (37.86%), Postives = 116/206 (56.31%), Query Frame = 1 
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK+++ VP  N VD+  ND+  + +S+  G+  GFN+ VGGG+  TH  ++T+PR   +LGY+   D +   +A++ TQR+ G R +RK+++ KY I   G+E F+  VE   G KF+  R     E     GW +  D      L ++NGRI      K+K  + EI   +  + RIT NQNII+  + K  K
Sbjct:  199 EPILGANYLPRKFKISIVVPPLNDVDLHANDLNFIAISNL-GQLVGFNVLVGGGLAMTHNDKSTYPRTASELGYISVVDTIKIAEAVITTQRDLGDRSNRKHAKTKYTIERVGVEFFKKEVEVRAGIKFKHIRPYSFTERGDRFGWVQGIDNQWHLTLFIENGRIIDDSHRKLKTGMLEIARIHQGDFRITANQNIIIAGVEKKHK 403
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CYSI_ECO8A1.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECO811.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECO5E1.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECO571.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECO551.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECO451.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECO271.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECO241.628e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_CITK81.628e-3339.81Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_BAUCH1.628e-3337.86Sulfite reductase [NADPH] hemoprotein beta-compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
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