CN188918

Overview
NameCN188918
Unique NameCN188918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188918_ssr162 microsatellite CN188918_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8214 contig Csv1_Contig8214:183..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHISS (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shigella sonnei (strain Ss046) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIITGVPESEK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALPC (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella paratyphi C (strain RKS4594) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G++ F+  VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALCH (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella choleraesuis GN=cysI PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G++ F+  VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_PHOPR (Sulfite reductase [NADPH] hemoprotein beta-component OS=Photobacterium profundum GN=cysI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 78/206 (37.86%), Postives = 119/206 (57.77%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G+ +LPRKFK  V +P  N VD+  ND+  + ++D NG+  GFN+ VGGG+  TH  +TT+PR  +  G++P  + L    A+V TQR+ G R +RK ++ KY +   G++ F++ VE+  G  FE  R     +    +GW E  DG     L ++NGR+    GK  KT + EI + +  + R+T NQN+I+  +  A K
Sbjct:  195 EPILGSNYLPRKFKTTVVIPPQNDVDVHANDLNFIAIAD-NGKLVGFNVLVGGGLAMTHGDKTTYPRRADDFGFIPLVNTLEVAAAVVTTQRDWGNRSNRKNAKTKYTLDRVGVDVFKAEVEKRAGITFEASRPYEFTDRGDRIGWVEGIDGKHHLALFIENGRLLDTPGKPLKTGVAEIAKIHKGDFRMTANQNLIVAGVPAADK 399          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_NITEU (Sulfite reductase [NADPH] hemoprotein beta-component OS=Nitrosomonas europaea GN=cysI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 69/205 (33.66%), Postives = 114/205 (55.61%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSH---LGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EP YG  ++PRKFK+   +P +N +DI   D+G + +  ENG+  GFN+ +GGGMGRT +   T+PR    +G++  + ++   +A++  QR+ G R DR  +R KY I   G++  +  +E   G    P      ++F S+    GW E GDG     L ++NGR+   M   + +I   +  + R+TPNQN+++ ++  A K
Sbjct:  210 EPFYGQTYMPRKFKIGFVIPPNNDIDIYAQDLGYIAIIGENGKIAGFNVAIGGGMGRTDKAPHTYPRTASVIGFITPDRLISVTEAVMGVQRDYGNRADRSRARFKYTIDDKGLDWIKLAIEDRAG----PLESARPYDFTSNADIYGWIESGDGFHHFTLFIENGRLNRDMLDKIAQIAHVHKGHFRLTPNQNLMIANVATADK 410          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ECO7I (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H    T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNRKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRSDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_VIBVU (Sulfite reductase [NADPH] hemoprotein beta-component OS=Vibrio vulnificus GN=cysI PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 81/209 (38.76%), Postives = 118/209 (56.46%), Query Frame = 1
Query:   55 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            +  EPI G  +LPRKFK  V +P  N VD+  ND+  V ++ E G+  GFN+ VGGG+  TH   +T+PR  +  GY+P E  L    A+V TQR+ G R +RK ++ KY +   G + F++ VE+  G KFE  R     E    +GW E  DG     L ++NGR+    GK  KT + EI + +  + R+T NQN+I+  + K+ K
Sbjct:  207 EDDEPILGKTYLPRKFKTTVVIPPQNDVDVHANDLNFVAIA-EKGKLIGFNVLVGGGLAMTHGDTSTYPRRADDFGYIPLEKTLDVAAAVVTTQRDWGNRSNRKNAKTKYTLDRVGTDVFKAEVEKRAGIKFEVSRPYEFTERGDRIGWVEGIDGKHHLTLFIENGRLLDYPGKPLKTGVAEIAKIHKGDFRMTANQNLIVAGVSKSNK 414          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SHIF8 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Shigella flexneri serotype 5b (strain 8401) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPSRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_SALTY (Sulfite reductase [NADPH] hemoprotein beta-component OS=Salmonella typhimurium GN=cysI PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +    RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQK 408          
BLAST of CN188918 vs. ExPASy Swiss-Prot
Match: CYSI_ESCF3 (Sulfite reductase [NADPH] hemoprotein beta-component OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=cysI PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 1
Query:   64 EPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWK 669
            EPI G  +LPRKFK  V +P  N +D+  ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D      L ++NGRI    G+  KT L EI + +  + RIT NQN+I+  + ++ K
Sbjct:  204 EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEK 408          
The following BLAST results are available for this feature:
BLAST of CN188918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CYSI_SHISS2.126e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALPC2.126e-3338.83Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALCH2.126e-3338.83Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_PHOPR2.126e-3337.86Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_NITEU2.126e-3333.66Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ECO7I2.126e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_VIBVU2.777e-3338.76Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SHIF82.777e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_SALTY2.777e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]
CYSI_ESCF32.777e-3339.32Sulfite reductase [NADPH] hemoprotein beta-compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188918 ID=CN188918; Name=CN188918; organism=Citrus sinensis; type=EST; length=714bp
GAGGCTGAAGTGGTAAAGGCACGTAATGATAATTCTCATGGAACAAATTT
CCCTGATTCTCCTGAGCCCATCTATGGGACTCAGTTCTTGCCAAGGAAGT
TCAAAGTTGCAGTAACGGTGCCAACAGATAACTCGGTGGATATTCTTACT
AATGATATTGGTGTTGTTGTTGTTTCTGATGAAAATGGGGAACCTCAGGG
ATTCAACTTATATGTTGGTGGTGGTATGGGAAGAACGCATCGGTTGGAAA
CCACATTTCCCCGTCTTGGAGAACAGTTGGGCTATGTGCCAAAAGAGGAC
ATTCTATATGCTGTGAAAGCTATTGTTGTTACCCAAAGAGAAAATGGGAG
GAGAGATGATCGCAAGTATAGTAGAATGAAATATTTGATCAGCTCCTGGG
GAATTGAGAAGTTTAGAAGTGTTGTTGAGCAATATTATGGAAAGAAATTT
GAGCCTTTCCGTCAATTGCCAGAGTGGGAATTTAAAAGTCATTTGGGATG
GCATGAGCAGGGGGATGGTGGTTTATTTTGTGGACTTCATGTTGATAATG
GTCGTATTGCGGGTAAAATGAAGAAGACATTGAGGGAGATAATAGAGAAG
TATAACTTAAATGTGCGGATCACTCCTAACCAGAATATTATCTTGTGTGA
CATTCGTAAAGCATGGAAGCGTCCCCATCACTACAGCTCTCGCACAGGGT
GGACTGCTGCTTTC
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