CN188910

Overview
NameCN188910
Unique NameCN188910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATL1_FELCA (Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.173e-18
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  282 GGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE 608
            GGL   AF+Y+K NGGLD+EE+YPY  +   CK+  EN    V D  +I    E+EL   +  V P+S A +  +D FRFYK G+Y    C +   DV+H V+ VGYG +
Sbjct:    1 GGLIDDAFQYVKDNGGLDSEESYPYHAQGDSCKYRPENSVANVTDYWDIP-SKENELMITLAAVGPISAAIDASLDTFRFYKEGIYYDPSCSSE--DVDHGVLVVGYGAD 107          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.598e-17
Identity = 67/190 (35.26%), Postives = 94/190 (49.47%), Query Frame = 3
Query:   84 LPETKDWRES---GILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGIS--LSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK--------FSSENVGV-QVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYG 602
            LPE+ DWR       +SPV++Q  CGSC++F++ G LEA          +  LS Q++V C+     QGC+GG P         + G+  E  +PYT  D  CK        +SSE   V       N  L   + ++H      P++VAFEV D F  Y SG+Y  T   +   P ++ NHAV+ VGYG
Sbjct:  230 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCSP--YAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHG-----PMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYG 412          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 54/188 (28.72%), Postives = 93/188 (49.47%), Query Frame = 3
Query:   48 TTKGNHKLTADVLPETKDWRES-GILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTG--KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYG 602
            T K       + +P T DWR++  I+S VK+QG C  CW  +   +++A +     + + +S Q+L+DC +  N  GCNGG    A+  +  N GL +E+ YP+ G  K   C  + +   V  +    +    E  + H + +  P++V    +   + Y+ GV  +T     P  V+H+V+ VG+G
Sbjct:  114 TKKVESNTWGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCERCGN--GCNGGFVWDAYLTVLNNSGLASEKDYPFQGDRKPHRC-LAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTIN-MKLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFG 297          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 53/176 (30.11%), Postives = 86/176 (48.86%), Query Frame = 3
Query:   84 LPETKDWRE-SGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTG--KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYG 602
            +P T DWR+  G++S VK Q  C  CW  +  G++EA +   + + + LS Q+L+DC +     GC GG    AF  +  N GL +E+ YP+ G  K   C          + D + +    E ++   +    P++V    +   + YK GV  +T     P  V+H+V+ VG+G
Sbjct:  128 VPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDCGRC--GDGCRGGFVWDAFITVLNNSGLASEKDYPFQGQVKPHRCLAKKRTKVAWIQDFIMLP-DNEQKIAWYLATQGPITVTIN-MKLLKLYKKGVIEATPTSCDPFLVDHSVLLVGFG 299          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.353e-16
Identity = 59/176 (33.52%), Postives = 90/176 (51.14%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGIS-LSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNG-GLDTEEAYPYTGKDGVCK-FSSENVGVQVLD-SVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGY 599
            LP   DWR+  +++PV++Q  CG CW FS   ++E+A     GK +  LS QQ++DC  +FNN GC GG P  A  ++      L  +  YP+   +G C+ F     GV V D S     G EDE+  A+    P+ V  + +  ++ Y  G+     C +   + NHAV+  G+
Sbjct:   99 LPLRFDWRDKHVVNPVRNQEMCGGCWAFSVVSAIESA-RAIQGKSLDYLSVQQVIDC--SFNNSGCLGGSPLCALRWLNETQLKLVADSQYPFKAVNGQCRHFPQSQAGVSVKDFSAYNFRGQEDEMARALLSFGPLVVIVDAM-SWQDYLGGIIQH-HCSSG--EANHAVLITGF 267          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 49/175 (28.00%), Postives = 87/175 (49.71%), Query Frame = 3
Query:   84 LPETKDWRE-SGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENV-GVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYG 602
            +P + DWR+ +  +SP+KDQ +C  CW  +  G++E  +  +F   + +S Q+L+DC +     GC+GG    AF  +  N GL +E+ YP+ GK    +   +    V  +    +    E  +   +    P++V    +   + Y+ GV  +T     P  V+H+V+ VG+G
Sbjct:  128 VPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGRC--GDGCHGGFVWDAFITVLNNSGLASEKDYPFQGKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTIN-MKPLQLYRKGVIKATPTTCDPQLVDHSVLLVGFG 299          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.936e-16
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGI-SLSEQQLVDCAQAFNNQGCNGGLPSQAFEYI-KYNGGLDTEEAYPYTGKDGVCK-FSSENVGVQVLD-SVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGY 599
            LP   DWR+  +++ V++Q  CG CW FS  G++E+AY    GK +  LS QQ++DC  ++NN GCNGG    A  ++ K    L  +  YP+  ++G+C  FS  + G  +   S       EDE+  A+    P+ V  + V  ++ Y  G+     C +   + NHAV+  G+
Sbjct:  108 LPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAY-AIKGKPLEDLSVQQVIDC--SYNNYGCNGGSTLNALNWLNKMQVKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLVVIVDAV-SWQDYLGGIIQH-HCSSG--EANHAVLITGF 276          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.714e-16
Identity = 61/176 (34.66%), Postives = 87/176 (49.43%), Query Frame = 3
Query:  120 LSPVKDQGHCGSCWTFSTTGSLEAAYHQA--FGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKD-GVCKFSSENVGVQVLDSVNIT--LGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGN-----TPMDV-NHAVVAVGYGVE 608
            ++P+++QG CGSC+   +  +LEA       F +   LS Q +VDC+    ++GCNGG P         + GL  +   PYTG+D G C  S         D   I    GA +E    + L+   P  V FEV + F+FYK G+Y  T          P ++ NHAV+ VGYGV+
Sbjct:  235 VTPIRNQGICGSCYASPSAAALEARIRLVSNFSEQPILSPQTVVDCSPY--SEGCNGGFPFLIAGKYGEDFGLPQKIVIPYTGEDTGKCTVSKNCTRYYTTDYSYIGGYYGATNEKLMQLELISNGPFPVGFEVYEDFQFYKEGIYHHTTVQTDHYNFNPFELTNHAVLLVGYGVD 408          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 56/181 (30.94%), Postives = 88/181 (48.62%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC-KFSSENVGVQVLDSVNITLGAEDELQHAVGLVR---PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            LP   D R    ++P++ QG CGSCW FS   S E+AY       + L+EQ+LVDCA   +  GC+G    +  EYI+ NG +  E  YPY  ++  C + +++  G++  +   I+    ++++ A+        V +  + ++ FR Y          G  P    HAV  VGYG   G
Sbjct:  109 LPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDCA---SQNGCHGDTIPRGIEYIQQNGVVQ-EHYYPYVAREQSCHRPNAQRYGLK--NYCQISPPDSNKIRQALTQTHTAVAVIIGIKDLNAFRHYDGRTIMQHDNGYQPN--YHAVNIVGYGNTQG 281          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 54/179 (30.17%), Postives = 85/179 (47.49%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC-KFSSENVGVQVLDSVNITLGAEDELQHAV-GLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            +P   D R  G ++ +K+Q  CGSCW FS   ++E+ Y       + LSEQ+LVDCA   +  GC G        YI+ NG ++ E++YPY  ++G C + +++  G++ L  +    G +     A       V +    +D FR Y       +  G       HA+  VGYG + G
Sbjct:  110 IPNEIDLRALGYVTKIKNQVACGSCWAFSGVATVESNYLSYDNVSLDLSEQELVDCA---SQHGCGGDTVLNGLRYIQKNGVVE-EQSYPYKAREGRCQRPNAKRYGIKDLCQIYPPNGDKIRTYLATKQAALSVIIGIRDLDSFRHYDGRTILQSDNGGKRN--FHAINIVGYGSKQG 282          
The following BLAST results are available for this feature:
BLAST of CN188910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
CATL1_FELCA7.173e-1843.64Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE... [more]
CATC_RAT1.598e-1735.26Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATW_MOUSE4.649e-1728.72Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATW_FELCA4.649e-1730.11Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
CATO_MOUSE1.353e-1633.52Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]
CATW_HUMAN3.014e-1628.00Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATO_HUMAN3.936e-1632.95Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
CATC_SCHMA6.714e-1634.66Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]
PEPT1_EURMA5.683e-1530.94Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
PEPT1_PSOOV1.266e-1430.17Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188910 ID=CN188910; Name=CN188910; organism=Citrus sinensis; type=EST; length=614bp
GACGGTTCCAAAGGCACAGGTTGGGAGCTGCACAAAACTGCTCTGCCACT
ACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAAGA
CTGGAGGGAATCTGGCATATTAAGCCCAGTTAAAGACCAAGGTCACTGTG
GATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCTTACCAC
CAGGCCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTGTAGACTG
TGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGTTGCCATCCCAAG
CCTTTGAATACATCAAGTACAATGGTGGCCTTGATACTGAGGAAGCATAT
CCCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTGG
CGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAAT
TACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGTA
GTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAATG
TGGAAATACTCCCATGGATGTGAACCATGCTGTCGTTGCTGTTGGGTACG
GAGTTGAAGATGGT
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