CN188910

Overview
NameCN188910
Unique NameCN188910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:500..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: GMSA_DICDI (Gamete and mating-type specific protein A OS=Dictyostelium discoideum GN=gmsA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 3
Query:   93 TKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKG----ISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGY 599
            T DW  +   +P++DQG CGSCW F+++ +LE+ Y   +G      + LS Q  V+C  +    GCNGG     F + K   G+  E+  PY    G    ++ +V      +   T   +  L  A     PV++A  V   F+ YKSG+Y+S         +NH V+ VGY
Sbjct:  243 TVDW--TSYQTPIRDQGQCGSCWAFASSAALESRYLIKYGTAQKSTLQLSNQNAVNCIAS----GCNGGWSGNYFNFFK-TPGIAYEKDDPYKAVTGTSCITTSSVARFKYTNYGYTEKTKAALL-AELKKGPVTIAVYVDSAFQNYKSGIYNS---ATKYTGINHLVLLVGY 404          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.160e-14
Identity = 55/182 (30.22%), Postives = 83/182 (45.60%), Query Frame = 3
Query:   87 PETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC------KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            P   D R+   ++P++ QG CGSCW FS   + E+AY     + + L+EQ+LVDCA   +  GC+G    +  EYI++NG +  E  Y Y  ++  C      +F   N       +VN    A  +   A+ ++    +  + +D FR Y          G  P    HAV  VGY    G
Sbjct:  109 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCA---SQHGCHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNVNKIREALAQTHSAIAVI----IGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYSNAQG 280          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.821e-14
Identity = 57/183 (31.15%), Postives = 86/183 (46.99%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKF-SSENVGVQVLDSVNITLGAEDELQHAVGLVR-----PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            +P   D R    ++P++ QG CGSCW FS   + E+AY       + LSEQ+LVDCA   +  GC+G    +  EYI+ NG ++ E +YPY  ++  C+  +S++ G+    S    +   D  Q    L +      V +  + +  F+ Y          G  P    HAV  VGYG   G
Sbjct:  109 VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCA---SQHGCHGDTIPRGIEYIQQNGVVE-ERSYPYVAREQRCRRPNSQHYGI----SNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQG 281          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = 3
Query:   69 LTADVLPETKDWRES--GILSPVKDQGHCGSCWTFSTTGSL--EAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPY----TGKDGVCKFSSENVG-----VQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED 611
            ++A   P++ D+RE     +  V DQG CGSCW FS+  S+     +     K +  S Q +V C +   +  C+GG     + ++    G  T+E  PY    TG  G C     +        +   +V+  L A   +  A+    P+  AF V   F +Y+SGVY  T      ++  HAV  VGYG +D
Sbjct:   69 VSATQAPDSFDFREEYPHCIPEVVDQGGCGSCWAFSSVASVGDRRCFAGLDKKAVKYSPQYVVSCDR--GDMACDGGWLPSVWRFLT-KTGTTTDECVPYQSGSTGARGTCPTKCADGSDLPHLYKATKAVDYGLDA-PAIMKALATGGPLQTAFTVYSDFMYYESGVYQHT---YGRVEGGHAVDMVGYGTDD 255          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 65/214 (30.37%), Postives = 94/214 (43.93%), Query Frame = 3
Query:    6 FQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRES--GILSPVKDQGHCGSCWTFSTTGSL--EAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPY----TGKDGVC--KFSSENVGVQVLDSVNITLGAED--ELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVED 611
            F ++  GAA   + T K       D +PE+ D+RE     +  V DQG CGSCW FS+  +            K +  S Q +V C     +  CNGG     ++++    G  T+E  PY    T   G C  K +  +  V +  + +      D   +  A+    P+ VAF V   F +Y+SGVY  T      M+  HAV  VGYG +D
Sbjct:   56 FLKNAKGAAPRGTFTDK-------DDVPESFDFREEYPHCIPEVVDQGGCGSCWAFSSVATFGDRRCVAGLDKKPVKYSPQYVVSCDH--GDMACNGGWLPNVWKFLT-KTGTTTDECVPYKSGSTTLRGTCPTKCADGSSKVHLATATSYKDYGLDIPAMMKALSTSGPLQVAFLVHSDFMYYESGVYQHT---YGYMEGGHAVEMVGYGTDD 256          
The following BLAST results are available for this feature:
BLAST of CN188910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
GMSA_DICDI1.654e-1431.79Gamete and mating-type specific protein A OS=Dicty... [more]
PEPT1_DERPT2.160e-1430.22Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]
PEPT1_DERFA2.821e-1431.15Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
CATB3_GIALA3.448e-1229.38Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CATB2_GIALA3.448e-1230.37Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188910 ID=CN188910; Name=CN188910; organism=Citrus sinensis; type=EST; length=614bp
GACGGTTCCAAAGGCACAGGTTGGGAGCTGCACAAAACTGCTCTGCCACT
ACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAAGA
CTGGAGGGAATCTGGCATATTAAGCCCAGTTAAAGACCAAGGTCACTGTG
GATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCTTACCAC
CAGGCCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTGTAGACTG
TGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGTTGCCATCCCAAG
CCTTTGAATACATCAAGTACAATGGTGGCCTTGATACTGAGGAAGCATAT
CCCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTGG
CGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAAT
TACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGTA
GTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAATG
TGGAAATACTCCCATGGATGTGAACCATGCTGTCGTTGCTGTTGGGTACG
GAGTTGAAGATGGT
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