CN188910

Overview
NameCN188910
Unique NameCN188910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:500..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.240e-38
Identity = 84/179 (46.93%), Postives = 113/179 (63.13%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            LPE+ DWRE G ++PVK+QG CGSCW FS   ++E+      G+ I+LSEQ+LV+C+    N GCNGGL   AF++I  NGG+DTE+ YPY   DG C  + EN  V  +D   ++    E  LQ AV   +PVSVA E     F+ Y SGV+S  +CG +   ++H VVAVGYG ++G
Sbjct:  141 LPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVECSTNGQNSGCNGGLMDDAFDFIIKNGGIDTEDDYPYKAVDGKCDINRENAKVVSIDGFEDVPQNDEKSLQKAVA-HQPVSVAIEAGGREFQLYHSGVFSG-RCGTS---LDHGVVAVGYGTDNG 314          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 8.150e-38
Identity = 85/181 (46.96%), Postives = 114/181 (62.98%), Query Frame = 3
Query:   78 DVLPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            + LPE+ DWR  G ++ +KDQG CGSCW FS   ++E       G  ISLSEQ+LVDC  ++ N+GCNGGL   AF++I  NGG+DTE+ YPY GKD  C  + +N  V  +DS  ++T  +E  LQ AV   +PVSVA E     F+ Y SG+++  KCG     ++H V AVGYG E+G
Sbjct:  127 EALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCDTSY-NEGCNGGLMDYAFDFIINNGGIDTEDDYPYKGKDERCDVNRKNAKVVTIDSYEDVTPNSETSLQKAVA-NQPVSVAIEAGGRAFQLYSSGIFTG-KCGTA---LDHGVAAVGYGTENG 301          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.064e-37
Identity = 84/203 (41.38%), Postives = 114/203 (56.16%), Query Frame = 3
Query:    3 RFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE 608
            ++Q+HR G         K   +     +P + DWRE G ++PVKDQG CGSCW FS TG+LE       GK ISL+EQ LVDC+    N+GCNGG     F Y++ NGGLD+E +YPY GK   C+++ +         V+I    E +L  AV  V P+SVA       F+FYK G+Y   +C   P  ++HA++ VGY  E
Sbjct:   39 QYQKHRKG---------KQFQERLLPEIPTSVDWREKGYMTPVKDQGQCGSCWAFSATGALEGQMFWKTGKLISLNEQNLVDCSGPQGNEGCNGGFMDNPFRYVQENGGLDSEASYPYEGKVKTCRYNPKYSAANDTGFVDIP-SQEKDLAKAVATVGPISVAAGASHVSFQFYKKGIYFEPRC--DPEGLDHAMLLVGYSYE 229          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.390e-37
Identity = 84/181 (46.41%), Postives = 116/181 (64.09%), Query Frame = 3
Query:   78 DVLPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            D LPE+ DWR+ G ++ VKDQG CGSCW FST G++E       G  I+LSEQ+LVDC  ++ N+GCNGGL   AFE+I  NGG+DT++ YPY G DG C    +N  V  +DS  ++   +E+ L+ AV   +P+S+A E     F+ Y SG++  + CG     ++H VVAVGYG E+G
Sbjct:  135 DELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCDTSY-NEGCNGGLMDYAFEFIIKNGGIDTDKDYPYKGVDGTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVA-HQPISIAIEAGGRAFQLYDSGIFDGS-CGT---QLDHGVVAVGYGTENG 309          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.390e-37
Identity = 91/205 (44.39%), Postives = 127/205 (61.95%), Query Frame = 3
Query:   18 RLGAAQNCSATTKGNHKLTADV----LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            R   A+  +     N K +A V    +PET DWR+ G ++P+KDQG CGSCW FSTT ++E       G+ ISLSEQ+LVDC +++ NQGCNGGL   AF++I  NGGL+TE+ YPY G  G C    +N  V  +D   ++    E  L+ A+   +PVSVA E     F+ Y+SG+++ + CG    +++HAVVAVGYG E+G
Sbjct:  119 RTEPARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPIKDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDCDKSY-NQGCNGGLMDYAFQFIMKNGGLNTEKDYPYRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALKKAIS-YQPVSVAIEAGGRIFQHYQSGIFTGS-CGT---NLDHAVVAVGYGSENG 317          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.390e-37
Identity = 80/179 (44.69%), Postives = 107/179 (59.78%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA-FNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            LP++ DWRE G ++ VK QG CGSCW FS  G+LEA      GK +SLS Q LVDC+ A + N+GCNGG  ++AF+YI  N G+D+E +YPY   DG C++  +N        + +  G+E+ L+ AV    PVSV  +     F  YK+GVY    C     +VNH V+ VGYG  DG
Sbjct:  115 LPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSTAKYGNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAMDGKCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSC---TQNVNHGVLVVGYGNLDG 290          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.816e-37
Identity = 80/180 (44.44%), Postives = 105/180 (58.33%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA--QAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            LP+T DWRE G ++ VK QG CG+CW FS  G+LE       GK ISLS Q LVDC+  + + N+GC GG  ++AF+YI  NGG++ + +YPY   D  C ++S+N        + +  G ED L+ AV    PVSV  +     F FYKSGVY    C     +VNH V+ VGYG  DG
Sbjct:  123 LPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNEEKYGNKGCGGGYMTEAFQYIIDNGGIEADASYPYKATDEKCHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDPSCTG---NVNHGVLVVGYGTLDG 299          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.097e-37
Identity = 80/176 (45.45%), Postives = 107/176 (60.80%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE 608
            +P+  DWR  G ++PVK+QG+C S W FS TGSLE    +  G+ + LSEQ L+DC  +     C+GG    AF+Y+K NGGL TEE+YPY G    C++ +EN    V D V I  G E+ L  AV  V P+SVA +   D F+FY SG+Y   +C    + +NHAV+ VGYG E
Sbjct:  114 VPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPYIGPGRKCRYHAENSAANVRDFVQIP-GREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKR--VHLNHAVLVVGYGFE 286          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.283e-37
Identity = 76/178 (42.70%), Postives = 110/178 (61.80%), Query Frame = 3
Query:   84 LPETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            +P++ D+R+ G ++PVK+QG CGSCW FS+ G+LE    +  GK ++LS Q LVDC     N GC GG  + AF+Y++ NGG+D+E+AYPY G+D  C +++     +      I +G E  L+ AV  V PVSV+ +  +  F+FY  GVY    C     +VNHAV+ VGYG + G
Sbjct:  115 VPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVS--ENYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRD--NVNHAVLVVGYGTQKG 288          
BLAST of CN188910 vs. ExPASy Swiss-Prot
Match: CATK_RABIT (Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.283e-37
Identity = 77/177 (43.50%), Postives = 109/177 (61.58%), Query Frame = 3
Query:   87 PETKDWRESGILSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 614
            P++ D+R+ G ++PVK+QG CGSCW FS+ G+LE    +  GK ++LS Q LVDC     N GC GG  + AF+Y++ N G+D+E+AYPY G+D  C ++      +      I  G E  L+ AV  V PVSVA +  +  F+FY  GVY    C +   +VNHAV+AVGYG++ G
Sbjct:  116 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENYGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSD--NVNHAVLAVGYGIQKG 288          
The following BLAST results are available for this feature:
BLAST of CN188910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
ORYB_ORYSJ6.240e-3846.93Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
ORYA_ORYSJ8.150e-3846.96Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CATL6_HUMAN1.064e-3741.38Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
RD21A_ARATH1.390e-3746.41Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
GCP1_ARATH1.390e-3744.39Germination-specific cysteine protease 1 OS=Arabid... [more]
CATS_BOVIN1.390e-3744.69Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATS_MOUSE1.816e-3744.44Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
TEST2_MOUSE3.097e-3745.45Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATK_RAT5.283e-3742.70Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CATK_RABIT5.283e-3743.50Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188910 ID=CN188910; Name=CN188910; organism=Citrus sinensis; type=EST; length=614bp
GACGGTTCCAAAGGCACAGGTTGGGAGCTGCACAAAACTGCTCTGCCACT
ACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAAGA
CTGGAGGGAATCTGGCATATTAAGCCCAGTTAAAGACCAAGGTCACTGTG
GATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAGGCTGCTTACCAC
CAGGCCTTTGGAAAGGGTATCTCTTTGTCAGAACAGCAGCTTGTAGACTG
TGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGTTGCCATCCCAAG
CCTTTGAATACATCAAGTACAATGGTGGCCTTGATACTGAGGAAGCATAT
CCCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTGG
CGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAAT
TACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGTA
GTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAATG
TGGAAATACTCCCATGGATGTGAACCATGCTGTCGTTGCTGTTGGGTACG
GAGTTGAAGATGGT
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