CN182150

Overview
NameCN182150
Unique NameCN182150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182150 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.298e-44
Identity = 91/169 (53.85%), Postives = 111/169 (65.68%), Query Frame = 3
Query:  258 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSF 761
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQL GGERV FLFTIKQ    G  +   G+FLVPSYRGSSF
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDGIKGDFLVPSYRGSSF 202          
BLAST of CN182150 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.668e-42
Identity = 92/176 (52.27%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  240 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSF 761
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQLAGGERVPFLFTIK L+A G    F G+F VPSYRG++F
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLLAKGDAGQFLGQFDVPSYRGATF 246          
BLAST of CN182150 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.635e-32
Identity = 73/154 (47.40%), Postives = 103/154 (66.88%), Query Frame = 3
Query:  330 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSF 761
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++F
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANF 182          
BLAST of CN182150 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.635e-32
Identity = 73/154 (47.40%), Postives = 103/154 (66.88%), Query Frame = 3
Query:  330 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSF 761
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P LFT+K LVAS +P         +F GEF VPSYR ++F
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANF 182          
BLAST of CN182150 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.708e-31
Identity = 73/153 (47.71%), Postives = 97/153 (63.40%), Query Frame = 3
Query:  339 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSF 761
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL GGERVPFLFTIK LVA  +P         +F G F VPSYRG++F
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNLVAQTQPGLSSLNTSTDFEGTFKVPSYRGAAF 184          
BLAST of CN182150 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.552e-27
Identity = 69/154 (44.81%), Postives = 89/154 (57.79%), Query Frame = 3
Query:  330 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSF 761
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL GGE+VPF FTIK LV   +P         +F G+F VPSYRG++F
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKNLVGKTEPGFSSINSSIDFEGDFRVPSYRGATF 185          
BLAST of CN182150 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.400e-25
Identity = 63/151 (41.72%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  339 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSF 761
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L GGE VPF FT+K    + +P         +F G+F VPSYRG+ F
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFTGTTEPGFTSINSSTDFVGDFNVPSYRGAGF 185          
BLAST of CN182150 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.022e-24
Identity = 65/159 (40.88%), Postives = 90/159 (56.60%), Query Frame = 3
Query:  315 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIKQLVAS--------GKPENFGGEFLVPSYRGSSF 761
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L GGE VPFLFT+K LVAS            +  G + VPSYR S+F
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFTVKGLVASTSEPATSINTSTDLRGGYRVPSYRTSNF 184          
BLAST of CN182150 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.097e-13
Identity = 42/71 (59.15%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  474 KAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFLFTIK 686
            KAEG+NKN+PPDFQ TKLMTR                         DGIDYAAVTVQL GGERVPFLFTIK
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLFTIK 55          
The following BLAST results are available for this feature:
BLAST of CN182150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE2.298e-4453.85Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR3.668e-4252.27Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB2.635e-3247.40Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN2.635e-3247.40Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP1.708e-3147.71Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA52.552e-2744.81Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY31.400e-2541.72Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE72.022e-2440.88Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU2.097e-1359.15Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0002A10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182150 ID=CN182150; Name=CN182150; organism=Citrus sinensis; type=EST; length=761bp
GGGATCAGCAGTAACCACAAGTGGTAGGGAGCAAGATGGCAGCCTCGTTA
CAAGCCGCAGCTACACTGATGCAACCCACCAAGGTGGGTGTGGTACCCGC
TCGCAGCAGCAGCCTGCAGCTGAGGTCTTCACAGAGCGTTTCGAAGGCTT
TTGGTGTCGACTCAGCTGGTGCTAGGATCTCTTGCTCTTTGAATAATGAC
TTGAAGGATTTGGCTCAGAAATGTGTTGATGCTACCAAGATCGCTGGCTT
TGCCCTCGCCACTTCTGCTCTCGTCGTTTCGGGAGCAAGTGCTGAAGGTG
TTCCAAAGAGGCTAACCTATGATGAAATCCAGAGCAAGACATACATGGAA
GTGAAGGGAACCGGAACTGCTAACCAGTGCCCAACCATTGATGGCGGAGT
TGACTCTTTTGCCTTCAAACCTGGCAAATACCAGGCTAAGAAGTTCTGCC
TAGAACCAACTTCCTTCACTGTCAAGGCTGAGGGTGTCAACAAGAATGCC
CCACCAGATTTCCAGAACACCAAGCTCATGACCCGCCTTACCTACACCCT
TGACGAGATTGAGGGACCTTTTGAAGTGTCCCCCGATGGCACCATTAAGT
TTGTGGAGAAGGATGGAATTGACTATGCTGCTGTGACAGTTCAGCTGGCT
GGAGGCGAGCGTGTGCCCTTCCTTTTCACCATCAAACAATTGGTAGCATC
AGGCAAACCTGAGAATTTCGGAGGAGAATTCCTGGTACCATCTTACCGTG
GATCATCCTTC
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