CN188904

Overview
NameCN188904
Unique NameCN188904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12271 contig Csv1_Contig12271:18..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_DICDI (Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 37/112 (33.04%), Postives = 71/112 (63.39%), Query Frame = -2
Query:  346 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYE---NQRLVSEERINAAFGKLALK 672
            ++HPY+SL  +LQ +G++  ++  + WGI+ND+Y+ D+ L++PP ++ L CI + S   +KD   W  EL V+M  +  +S +++D+YE    Q L ++  ++  + KL ++
Sbjct:  142 IYHPYKSLPFYLQSSGLDPASI-EIIWGIVNDSYRTDVCLLYPPFVVGLGCILLGSYLLKKDIKQWLSELNVEMKDIWEVSKDLIDYYEFEKQQSLQNQSELDLLYNKLPIR 252          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_AEDAE (Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  355 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEERINAAFGKL 672
            V+ PYR L+Q +QD G  D  +T L+W ++ND+ + D+ L++PP+ IA+ C+ IA V  +K+  AWF EL VDM  V+ I+  IL+ +E  +   E+ I     K+
Sbjct:  152 VYQPYRPLLQLIQDIGQEDQLLT-LTWRLINDSLRTDVSLLYPPYQIAIGCLQIACVILQKELKAWFAELNVDMEKVQEIARAILNVFELWKSYDEKEIQGLLEKM 256          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_DROPS (Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  406 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNT-AWFEELRVDMNVVKNISMEILDFYE 672
            V+ PYR L+Q +QD G  D  +T LSW I+ND+ + D+ L++PP+ IA+AC+ IA V  +KD+T  WF EL VD++ V+ I   I++ YE
Sbjct:  152 VYQPYRPLLQLVQDMGQEDQLLT-LSWRIVNDSLRTDVCLLYPPYQIAIACLQIACVILQKDSTKQWFAELNVDLDKVQEIVRAIVNLYE 240          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_DROME (Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  406 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNT-AWFEELRVDMNVVKNISMEILDFYE 672
            V+ PYR L+Q +QD G  D  +T LSW I+ND+ + D+ L++PP+ IA+AC+ IA V  +KD T  WF EL VD++ V+ I   I++ YE
Sbjct:  152 VYQPYRPLLQLVQDMGQEDQLLT-LSWRIVNDSLRTDVCLLYPPYQIAIACLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLYE 240          
BLAST of CN188904 vs. ExPASy Swiss-Prot
Match: CCNC_ANOGA (Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 36/89 (40.45%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  406 VFHPYRSLVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYE 672
            V+ PYR L+Q +QD G  +  +T L+W ++ND+ + D+ L++PP+ IA+ C+ IA V  +K+  +WF EL VDM+ V+ I+  I++ +E
Sbjct:  152 VYQPYRPLLQLMQDIGQEEQLLT-LTWRLINDSLRTDVSLLYPPYQIAIGCLQIACVILQKELKSWFAELNVDMDKVQEIARAIVNLFE 239          
The following BLAST results are available for this feature:
BLAST of CN188904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CCNC_DICDI1.244e-1633.04Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 ... [more]
CCNC_AEDAE1.625e-1639.62Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1[more]
CCNC_DROPS8.066e-1646.67Cyclin-C OS=Drosophila pseudoobscura pseudoobscura... [more]
CCNC_DROME1.797e-1546.67Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 S... [more]
CCNC_ANOGA1.165e-1440.45Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188904 ID=CN188904; Name=CN188904; organism=Citrus sinensis; type=EST; length=673bp
GAGGTTTTTTTTTTTTTTCTCGAATAAATCAATTTAGAAAGAAAACACAT
TGCCAGTACAAATCCCCTTTTCAGGCAGATTATAAAAGGTTATAAAAGTT
TATTAACACTAATTTTAACTACATTAACTGTTCCCCATATATGATATGAC
TGCCTTATGGAAAATGCCACCTGTACCAGGAGCGCATAGCTGTGCTCAAA
GGATTAGAGAATCAAAGGATTGATGATTTTATGATTGCCTACACCACGAC
CAGATACTTCTTCATATTAATCAATCATCCCTATTTTGGATACAACACAG
AGGGTGGTATCTAGCAAAGCAGCAGAGTCACCTAGCCATTTAAGTCTTCA
AAGCCAGTTTGCCGAAGGCAGCATTTATTCTCTCCTCACTAACCAGTCTT
TGGTTTTCATAAAAATCTAATATCTCCATTGAGATGTTTTTCACCACATT
CATATCAACACGAAGCTCTTCAAACCATGCGGTGTTATCTTTTTCTCTAT
ATACACTGGCAATATATATGCAAGCCAAAGCAATCAAATGTGGAGGATGT
ACAAGAATAAGGTCCATCTTATATGTGTCGTTCAGAATTCCCCAAGATAA
ATGGGTCATATTTATATCATTCATGCCAGCGTCCTGCAAAAACTGCACAA
GTGAACGGTAAGGATGGAATACA
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