CN188901

Overview
NameCN188901
Unique NameCN188901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:973..1741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.222e-41
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377

HSP 2 Score: 56.9954 bits (136), Expect = 8.222e-41
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGGSTMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGSTMFPGI 311
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.222e-41
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377

HSP 2 Score: 56.9954 bits (136), Expect = 8.222e-41
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGGSTMFPGI
Sbjct:  285 MKCDVDIRKDLYGNIVLSGGSTMFPGI 311
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.071e-40
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPER+YSVWIGGSILASLSTFQQMWISK EYDE GPSIVHRKCF
Sbjct:  308 PGIADRMSKEITALAPSSMKIKVVAPPERRYSVWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376

HSP 2 Score: 55.8398 bits (133), Expect = 1.071e-40
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYGNIVLSGGTTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_DAUCA (Actin-1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.087e-40
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = -1 
Query:  492 PVFADRMSKEITALAPSSMKIKVVAPPERKYS-VWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYS +WIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC
Sbjct:  308 PGIADRMSKEITALAPSSMKIKVVAPPERKYSDLWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 376

HSP 2 Score: 56.9954 bits (136), Expect = 3.087e-40
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYGNIVLSGGSTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_SCHDU (Actin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.088e-40
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITA+APSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  310 PGIADRMSKEITAVAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 378

HSP 2 Score: 53.5286 bits (127), Expect = 3.088e-40
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY NIVLSGG+TMFPGI
Sbjct:  286 MKCDVDIRKDLYNNIVLSGGTTMFPGI 312
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_CHLRE (Actin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.088e-40
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377

HSP 2 Score: 53.5286 bits (127), Expect = 3.088e-40
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY NIVLSGG+TMFPGI
Sbjct:  285 MKCDVDIRKDLYNNIVLSGGTTMFPGI 311
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.023e-40
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEI ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEIQALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377

HSP 2 Score: 54.299 bits (129), Expect = 4.023e-40
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGN VLSGGSTMFPGI
Sbjct:  285 MKCDVDIRKDLYGNHVLSGGSTMFPGI 311
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_DICDI (Major actin OS=Dictyostelium discoideum GN=act1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.023e-40
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376

HSP 2 Score: 55.4546 bits (132), Expect = 4.023e-40
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGN+VLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYGNVVLSGGTTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT10_DICDI (Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.023e-40
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376

HSP 2 Score: 55.4546 bits (132), Expect = 4.023e-40
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGN+VLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYGNVVLSGGTTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTA_PHYPO (Actin, plasmodial isoform OS=Physarum polycephalum GN=ARDA PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.241e-40
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376

HSP 2 Score: 55.4546 bits (132), Expect = 5.241e-40
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGN+VLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYGNVVLSGGTTMFPGI 310
The following BLAST results are available for this feature:
BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
ACT2_ORYSJ8.222e-4191.30Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI8.222e-4191.30Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACT2_PEA1.071e-4092.75Actin-2 OS=Pisum sativum PE=2 SV=1[more]
ACT1_DAUCA3.087e-4094.20Actin-1 OS=Daucus carota PE=2 SV=1[more]
ACT_SCHDU3.088e-4092.75Actin OS=Scherffelia dubia PE=2 SV=1[more]
ACT_CHLRE3.088e-4092.75Actin OS=Chlamydomonas reinhardtii PE=2 SV=1[more]
ACT6_SOLTU4.023e-4092.75Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT1_DICDI4.023e-4088.41Major actin OS=Dictyostelium discoideum GN=act1 PE... [more]
ACT10_DICDI4.023e-4088.41Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1... [more]
ACTA_PHYPO5.241e-4088.41Actin, plasmodial isoform OS=Physarum polycephalum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA
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