CN188901 | Citrus Genome Database

Overview


Name	CN188901
Unique Name	CN188901
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	770

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7281	contig	Csv1_Contig7281:973..1741.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_ACACA (Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.242e-40
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 375

HSP 2 Score: 55.4546 bits (132), Expect = 5.242e-40
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGN+VLSGG+TMFPGI
Sbjct:  283 MKCDVDIRKDLYGNVVLSGGTTMFPGI 309

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.829e-40
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM+KEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMTKEITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377

HSP 2 Score: 53.5286 bits (127), Expect = 6.829e-40
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY NIVLSGG+TMFPGI
Sbjct:  285 MKCDVDIRKDLYNNIVLSGGTTMFPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT22_DICDI (Putative actin-22 OS=Dictyostelium discoideum GN=act22 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.829e-40
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM+KE+T+LAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMNKELTSLAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376

HSP 2 Score: 55.4546 bits (132), Expect = 6.829e-40
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGN+VLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYGNVVLSGGTTMFPGI 310

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.897e-40
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQAMWIAKSEYDESGPSIVHRKCF 377

HSP 2 Score: 53.1434 bits (126), Expect = 8.897e-40
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            M+CD DIRKDLYGNIVLSGGSTM PGI
Sbjct:  285 MRCDVDIRKDLYGNIVLSGGSTMXPGI 311

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_FUCVE (Actin OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.897e-40
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P   +RM+KE+TALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 376

HSP 2 Score: 55.8398 bits (133), Expect = 8.897e-40
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYGNIVLSGGTTMFPGI 310

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSJ (Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.897e-40
Identity = 62/69 (89.86%), Postives = 62/69 (89.86%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P   DRMSKEITALAP SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct:  308 PGIGDRMSKEITALAPGSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPGIVHMKCF 376

HSP 2 Score: 56.6102 bits (135), Expect = 8.897e-40
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGN+VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYGNVVLSGGSTMFPGI 310

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT7_ORYSI (Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.897e-40
Identity = 62/69 (89.86%), Postives = 62/69 (89.86%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P   DRMSKEITALAP SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct:  308 PGIGDRMSKEITALAPGSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPGIVHMKCF 376

HSP 2 Score: 56.6102 bits (135), Expect = 8.897e-40
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGN+VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYGNVVLSGGSTMFPGI 310

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_FUCDI (Actin OS=Fucus distichus PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.898e-40
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P   +RM+KE+TALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 375

HSP 2 Score: 55.8398 bits (133), Expect = 8.898e-40
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  283 MKCDVDIRKDLYGNIVLSGGTTMFPGI 309

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_COSCS (Actin (Fragment) OS=Costaria costata PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 8.912e-40
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P   +RM+KE+TALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  263 PGIGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 331

HSP 2 Score: 55.8398 bits (133), Expect = 8.912e-40
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGNIVLSGG+TMFPGI
Sbjct:  239 MKCDVDIRKDLYGNIVLSGGTTMFPGI 265

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT2_ABSGL (Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.510e-39
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPSSMKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  309 PGIADRMQKEITALAPSSMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 377

HSP 2 Score: 51.6026 bits (122), Expect = 1.510e-39
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY NIV+SGG+TM+PGI
Sbjct:  285 MKCDVDIRKDLYSNIVMSGGTTMYPGI 311

The following BLAST results are available for this feature:

BLAST of CN188901 vs. ExPASy Swiss-Prot

BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398


Match Name	E-value	Identity	Description
ACT1_ACACA	5.242e-40	88.41	Actin-1 OS=Acanthamoeba castellanii PE=3 SV=1	[more]
ACT_VOLCA	6.829e-40	91.30	Actin OS=Volvox carteri PE=3 SV=1	[more]
ACT22_DICDI	6.829e-40	88.41	Putative actin-22 OS=Dictyostelium discoideum GN=a...	[more]
ACT_MESVI	8.897e-40	92.75	Actin OS=Mesostigma viride PE=3 SV=1	[more]
ACT_FUCVE	8.897e-40	88.41	Actin OS=Fucus vesiculosus PE=2 SV=1	[more]
ACT7_ORYSJ	8.897e-40	89.86	Actin-7 OS=Oryza sativa subsp. japonica GN=ACT7 PE...	[more]
ACT7_ORYSI	8.897e-40	89.86	Actin-7 OS=Oryza sativa subsp. indica GN=ACT7 PE=3...	[more]
ACT_FUCDI	8.898e-40	88.41	Actin OS=Fucus distichus PE=2 SV=1	[more]
ACT_COSCS	8.912e-40	88.41	Actin (Fragment) OS=Costaria costata PE=3 SV=2	[more]
ACT2_ABSGL	1.510e-39	92.75	Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA